Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CLDN1O95832 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN1O95832 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN1O95832 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN1O95832 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN1O95832 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN1O95832 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.73■□□□□ 0.91
CLDN1O95832 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN1O95832 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN1O95832 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CLDN1O95832 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN1O95832 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.72■□□□□ 0.91
CLDN1O95832 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN1O95832 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN1O95832 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN1O95832 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN1O95832 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN1O95832 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CLDN1O95832 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CLDN1O95832 AL449106.1-201ENST00000608517 1980 ntBASIC20.7■□□□□ 0.9
CLDN1O95832 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN1O95832 AC091305.1-201ENST00000479476 895 ntBASIC20.7■□□□□ 0.9
CLDN1O95832 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.7■□□□□ 0.9
CLDN1O95832 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.7■□□□□ 0.9
CLDN1O95832 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CLDN1O95832 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN1O95832 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN1O95832 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.69■□□□□ 0.9
CLDN1O95832 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN1O95832 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN1O95832 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN1O95832 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.68■□□□□ 0.9
CLDN1O95832 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN1O95832 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN1O95832 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN1O95832 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN1O95832 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.68■□□□□ 0.9
CLDN1O95832 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN1O95832 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.68■□□□□ 0.9
CLDN1O95832 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.68■□□□□ 0.9
CLDN1O95832 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.68■□□□□ 0.9
CLDN1O95832 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN1O95832 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN1O95832 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.67■□□□□ 0.9
CLDN1O95832 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN1O95832 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.67■□□□□ 0.9
CLDN1O95832 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.67■□□□□ 0.9
CLDN1O95832 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.67■□□□□ 0.9
CLDN1O95832 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLDN1O95832 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CLDN1O95832 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN1O95832 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.66■□□□□ 0.9
CLDN1O95832 SNX5-217ENST00000606557 1087 ntBASIC20.66■□□□□ 0.9
CLDN1O95832 MIR6722-201ENST00000617286 78 ntBASIC20.66■□□□□ 0.9
CLDN1O95832 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.66■□□□□ 0.9
CLDN1O95832 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.66■□□□□ 0.9
CLDN1O95832 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLDN1O95832 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN1O95832 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN1O95832 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLDN1O95832 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CLDN1O95832 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN1O95832 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLDN1O95832 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.63■□□□□ 0.89
CLDN1O95832 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.63■□□□□ 0.89
CLDN1O95832 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN1O95832 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CLDN1O95832 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLDN1O95832 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN1O95832 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN1O95832 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.63■□□□□ 0.89
CLDN1O95832 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.63■□□□□ 0.89
CLDN1O95832 CA15P2-201ENST00000611168 834 ntBASIC20.63■□□□□ 0.89
CLDN1O95832 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN1O95832 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.63■□□□□ 0.89
CLDN1O95832 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CLDN1O95832 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLDN1O95832 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN1O95832 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN1O95832 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN1O95832 AC004448.1-201ENST00000458332 883 ntBASIC20.62■□□□□ 0.89
CLDN1O95832 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.62■□□□□ 0.89
CLDN1O95832 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.62■□□□□ 0.89
CLDN1O95832 IKBKGP1-201ENST00000612193 1073 ntBASIC20.62■□□□□ 0.89
CLDN1O95832 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CLDN1O95832 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLDN1O95832 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN1O95832 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CLDN1O95832 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN1O95832 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN1O95832 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN1O95832 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN1O95832 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN1O95832 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN1O95832 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CLDN1O95832 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.6■□□□□ 0.89
CLDN1O95832 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN1O95832 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CLDN1O95832 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN1O95832 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms