RNA–Protein interactions for RNA: ENST00000433535.6

RPUSD3-206, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene RPUSD3, Length 1,178 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-206ENST00000433535 NISCHQ9Y2I1 1504 aa54.52■■■■■ 6.32
RPUSD3-206ENST00000433535 CCDC180Q9P1Z9 1646 aa48.87■■■■■ 5.41
RPUSD3-206ENST00000433535 ABCC9O60706 1549 aa48.67■■■■■ 5.38
RPUSD3-206ENST00000433535 RB1CC1Q8TDY2 1594 aa46.39■■■■■ 5.02
RPUSD3-206ENST00000433535 NACADO15069 1562 aa46.1■■■■■ 4.97
RPUSD3-206ENST00000433535 DCAF8L2P0C7V8 631 aa45.88■■■■■ 4.94
RPUSD3-206ENST00000433535 MYO15BQ96JP2 1530 aa45.5■■■■■ 4.87
RPUSD3-206ENST00000433535 UNC13AQ9UPW8 1703 aa45.42■■■■■ 4.86
RPUSD3-206ENST00000433535 DNAJC5BQ9UF47 199 aa45.39■■■■■ 4.86
RPUSD3-206ENST00000433535 PABPN1Q86U42 306 aaKnown RBP eCLIP45.3■■■■■ 4.84
RPUSD3-206ENST00000433535 ZCCHC6Q5VYS8 1495 aaKnown RBP45.26■■■■■ 4.84
RPUSD3-206ENST00000433535 BICRAQ9NZM4 1560 aa45.06■■■■■ 4.8
RPUSD3-206ENST00000433535 DCAF1Q9Y4B6 1507 aa45.01■■■■■ 4.8
RPUSD3-206ENST00000433535 SCRIBQ14160 1630 aa44.59■■■■■ 4.73
RPUSD3-206ENST00000433535 SHROOM4Q9ULL8 1493 aa44.4■■■■■ 4.7
RPUSD3-206ENST00000433535 CC2D2AQ9P2K1 1620 aa43.97■■■■■ 4.63
RPUSD3-206ENST00000433535 EIF4G1Q04637 1599 aaKnown RBP43.92■■■■■ 4.62
RPUSD3-206ENST00000433535 CECR2Q9BXF3 1484 aa43.79■■■■■ 4.6
RPUSD3-206ENST00000433535 NCAPD3P42695 1498 aa42.53■■■■■ 4.4
RPUSD3-206ENST00000433535 SMARCA4P51532 1647 aa42.53■■■■■ 4.4
RPUSD3-206ENST00000433535 ATAD2BQ9ULI0 1458 aa42.47■■■■■ 4.39
RPUSD3-206ENST00000433535 SMARCA2P51531 1590 aa42.36■■■■■ 4.37
RPUSD3-206ENST00000433535 BAZ1AQ9NRL2 1556 aaPredicted RBP42.31■■■■■ 4.36
RPUSD3-206ENST00000433535 HMGXB3Q12766 1538 aa42.29■■■■■ 4.36
RPUSD3-206ENST00000433535 BAZ1BQ9UIG0 1483 aaKnown RBP42.09■■■■■ 4.33
RPUSD3-206ENST00000433535 PEG3Q9GZU2 1588 aa42.07■■■■■ 4.33
RPUSD3-206ENST00000433535 MROH2BQ7Z745 1585 aa42.05■■■■■ 4.32
RPUSD3-206ENST00000433535 ERCC6Q03468 1493 aa41.98■■■■■ 4.31
RPUSD3-206ENST00000433535 NESP48681 1621 aa41.88■■■■■ 4.3
RPUSD3-206ENST00000433535 CUX2O14529 1486 aa41.8■■■■■ 4.28
RPUSD3-206ENST00000433535 LAMC3Q9Y6N6 1575 aa41.58■■■■■ 4.25
RPUSD3-206ENST00000433535 WIZO95785 1651 aa41.58■■■■■ 4.25
RPUSD3-206ENST00000433535 DNAJC5Q9H3Z4 198 aa41.46■■■■■ 4.23
RPUSD3-206ENST00000433535 THOC2Q8NI27 1593 aaKnown RBP41.44■■■■■ 4.22
RPUSD3-206ENST00000433535 KIF21AQ7Z4S6 1674 aa41.39■■■■■ 4.22
RPUSD3-206ENST00000433535 PDS5BQ9NTI5 1447 aa41.27■■■■■ 4.2
RPUSD3-206ENST00000433535 CADPSQ9ULU8 1353 aa41.25■■■■■ 4.19
RPUSD3-206ENST00000433535 RSF1Q96T23 1441 aaPredicted RBP41.21■■■■■ 4.19
RPUSD3-206ENST00000433535 TOP2AP11388 1531 aaKnown RBP41.04■■■■■ 4.16
RPUSD3-206ENST00000433535 MRC2Q9UBG0 1479 aa40.97■■■■■ 4.15
RPUSD3-206ENST00000433535 WDR62O43379 1518 aa40.88■■■■■ 4.14
RPUSD3-206ENST00000433535 CEP164Q9UPV0 1460 aa40.86■■■■■ 4.13
RPUSD3-206ENST00000433535 CFTRP13569 1480 aa40.84■■■■■ 4.13
RPUSD3-206ENST00000433535 FANCD2Q9BXW9 1451 aa40.83■■■■■ 4.13
RPUSD3-206ENST00000433535 PRDM2Q13029 1718 aa40.54■■■■■ 4.08
RPUSD3-206ENST00000433535 CCDC88BA6NC98 1476 aa40.54■■■■■ 4.08
RPUSD3-206ENST00000433535 URB2Q14146 1524 aaKnown RBP40.5■■■■■ 4.07
RPUSD3-206ENST00000433535 TOPBP1Q92547 1522 aa40.1■■■■■ 4.01
RPUSD3-206ENST00000433535 IFT140Q96RY7 1462 aa40■■■■□ 3.99
RPUSD3-206ENST00000433535 DNMBPQ6XZF7 1577 aa39.97■■■■□ 3.99
RPUSD3-206ENST00000433535 ZNF608Q9ULD9 1512 aaPredicted RBP39.97■■■■□ 3.99
RPUSD3-206ENST00000433535 ABCC8Q09428 1581 aa39.93■■■■□ 3.98
RPUSD3-206ENST00000433535 OSCARQ8IYS5 282 aa39.85■■■■□ 3.97
RPUSD3-206ENST00000433535 TRIM41Q8WV44 630 aa39.82■■■■□ 3.97
RPUSD3-206ENST00000433535 EIF4G3O43432 1585 aaKnown RBP39.8■■■■□ 3.96
RPUSD3-206ENST00000433535 TARBP1Q13395 1621 aaKnown RBP39.73■■■■□ 3.95
RPUSD3-206ENST00000433535 POLA1P09884 1462 aaPredicted RBP39.69■■■■□ 3.94
RPUSD3-206ENST00000433535 AQRO60306 1485 aaKnown RBP eCLIP39.61■■■■□ 3.932e-7■■□□□ 14.1
RPUSD3-206ENST00000433535 RAD54L2Q9Y4B4 1467 aa39.56■■■■□ 3.92
RPUSD3-206ENST00000433535 SUPT5HO00267 1087 aaKnown RBP39.54■■■■□ 3.92
RPUSD3-206ENST00000433535 CUX1P39880 1505 aa39.5■■■■□ 3.91
RPUSD3-206ENST00000433535 FGD5Q6ZNL6 1462 aa39.49■■■■□ 3.91
RPUSD3-206ENST00000433535 CHD1O14646 1710 aa39.47■■■■□ 3.91
RPUSD3-206ENST00000433535 SOGA1O94964 1423 aa39.47■■■■□ 3.91
RPUSD3-206ENST00000433535 RIMBP3CA6NJZ7 1639 aa39.45■■■■□ 3.91
RPUSD3-206ENST00000433535 RIMBP3BA6NNM3 1639 aa39.45■■■■□ 3.91
RPUSD3-206ENST00000433535 RIMBP3Q9UFD9 1639 aa39.45■■■■□ 3.91
RPUSD3-206ENST00000433535 TDRD9Q8NDG6 1382 aaKnown RBP39.39■■■■□ 3.9
RPUSD3-206ENST00000433535 ARHGEF11O15085 1522 aa39.34■■■■□ 3.89
RPUSD3-206ENST00000433535 WDR97A6NE52 1622 aa39.29■■■■□ 3.88
RPUSD3-206ENST00000433535 FBLN2P98095 1184 aa39.27■■■■□ 3.88
RPUSD3-206ENST00000433535 SNAPC4Q5SXM2 1469 aa39.24■■■■□ 3.87
RPUSD3-206ENST00000433535 GRIN2BQ13224 1484 aa39.12■■■■□ 3.85
RPUSD3-206ENST00000433535 MAGI1Q96QZ7 1491 aaPredicted RBP39.11■■■■□ 3.85
RPUSD3-206ENST00000433535 PBRM1Q86U86 1689 aa39.07■■■■□ 3.85
RPUSD3-206ENST00000433535 GAPVD1Q14C86 1478 aa39.02■■■■□ 3.84
RPUSD3-206ENST00000433535 ABCA10Q8WWZ4 1543 aa39.02■■■■□ 3.84
RPUSD3-206ENST00000433535 ABCA5Q8WWZ7 1642 aa39■■■■□ 3.83
RPUSD3-206ENST00000433535 CHMP7Q8WUX9 453 aaPredicted RBP38.98■■■■□ 3.83
RPUSD3-206ENST00000433535 CLASP1Q7Z460 1538 aa38.98■■■■□ 3.83
RPUSD3-206ENST00000433535 SYNJ2O15056 1496 aa38.98■■■■□ 3.83
RPUSD3-206ENST00000433535 ARAP1Q96P48 1450 aa38.97■■■■□ 3.83
RPUSD3-206ENST00000433535 CYB5RLQ6IPT4 315 aa38.96■■■■□ 3.83
RPUSD3-206ENST00000433535 SYNJ1O43426 1573 aa38.95■■■■□ 3.83
RPUSD3-206ENST00000433535 BIVM-ERCC5R4GMW8 1640 aa38.93■■■■□ 3.82
RPUSD3-206ENST00000433535 TOP2BQ02880 1626 aa38.91■■■■□ 3.82
RPUSD3-206ENST00000433535 WRNQ14191 1432 aaPredicted RBP eCLIP38.89■■■■□ 3.82
RPUSD3-206ENST00000433535 ADAMTS12P58397 1594 aa38.7■■■■□ 3.79
RPUSD3-206ENST00000433535 GRIN2AQ12879 1464 aa38.65■■■■□ 3.78
RPUSD3-206ENST00000433535 CEP170Q5SW79 1584 aa38.54■■■■□ 3.76
RPUSD3-206ENST00000433535 ERICH3Q5RHP9 1530 aa38.53■■■■□ 3.76
RPUSD3-206ENST00000433535 FHAD1B1AJZ9 1412 aa38.52■■■■□ 3.76
RPUSD3-206ENST00000433535 NUP160Q12769 1436 aa38.49■■■■□ 3.75
RPUSD3-206ENST00000433535 TRHP20396 242 aaPredicted RBP38.46■■■■□ 3.75
RPUSD3-206ENST00000433535 ERCC6L2Q5T890 1561 aa38.43■■■■□ 3.74
RPUSD3-206ENST00000433535 SHROOM2Q13796 1616 aa38.34■■■■□ 3.73
RPUSD3-206ENST00000433535 RUSC2Q8N2Y8 1516 aa38.16■■■■□ 3.7
RPUSD3-206ENST00000433535 KIF27Q86VH2 1401 aa38.11■■■■□ 3.69
RPUSD3-206ENST00000433535 PRG4Q92954 1404 aaPredicted RBP38.1■■■■□ 3.69
RPUSD3-206ENST00000433535 IGF1RP08069 1367 aa38.05■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms