Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.61■■■□□ 2.49
CLDN1O95832 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
CLDN1O95832 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
CLDN1O95832 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CLDN1O95832 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
CLDN1O95832 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CLDN1O95832 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
CLDN1O95832 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CLDN1O95832 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.2■■■□□ 2.26
CLDN1O95832 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CLDN1O95832 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
CLDN1O95832 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC28.89■■■□□ 2.22
CLDN1O95832 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC28.82■■■□□ 2.2
CLDN1O95832 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CLDN1O95832 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CLDN1O95832 AL356512.1-201ENST00000607453 1739 ntBASIC28.72■■■□□ 2.19
CLDN1O95832 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
CLDN1O95832 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CLDN1O95832 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
CLDN1O95832 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CLDN1O95832 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
CLDN1O95832 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CLDN1O95832 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.34■■■□□ 2.13
CLDN1O95832 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
CLDN1O95832 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CLDN1O95832 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.15■■■□□ 2.1
CLDN1O95832 ZNRF2P1-201ENST00000441407 443 ntBASIC28.11■■■□□ 2.09
CLDN1O95832 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLDN1O95832 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC28.05■■■□□ 2.08
CLDN1O95832 AC006077.2-201ENST00000623591 457 ntBASIC28.04■■■□□ 2.08
CLDN1O95832 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
CLDN1O95832 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.95■■■□□ 2.06
CLDN1O95832 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
CLDN1O95832 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC27.72■■■□□ 2.03
CLDN1O95832 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CLDN1O95832 AC015813.7-201ENST00000623294 581 ntBASIC27.62■■■□□ 2.01
CLDN1O95832 AP002365.1-201ENST00000603448 772 ntBASIC27.4■■□□□ 1.98
CLDN1O95832 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
CLDN1O95832 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CLDN1O95832 HES6-203ENST00000409160 1600 ntTSL 2 BASIC27.25■■□□□ 1.95
CLDN1O95832 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC27.23■■□□□ 1.95
CLDN1O95832 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CLDN1O95832 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CLDN1O95832 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC27.18■■□□□ 1.94
CLDN1O95832 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.17■■□□□ 1.94
CLDN1O95832 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CLDN1O95832 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CLDN1O95832 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC27.09■■□□□ 1.93
CLDN1O95832 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC27.06■■□□□ 1.92
CLDN1O95832 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC27.03■■□□□ 1.92
CLDN1O95832 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC27.03■■□□□ 1.92
CLDN1O95832 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC27.02■■□□□ 1.92
CLDN1O95832 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC27.02■■□□□ 1.92
CLDN1O95832 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC27.02■■□□□ 1.92
CLDN1O95832 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.98■■□□□ 1.91
CLDN1O95832 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.94■■□□□ 1.9
CLDN1O95832 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
CLDN1O95832 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CLDN1O95832 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC26.9■■□□□ 1.9
CLDN1O95832 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
CLDN1O95832 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.86■■□□□ 1.89
CLDN1O95832 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
CLDN1O95832 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
CLDN1O95832 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
CLDN1O95832 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CLDN1O95832 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CLDN1O95832 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.73■■□□□ 1.87
CLDN1O95832 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CLDN1O95832 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CLDN1O95832 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CLDN1O95832 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CLDN1O95832 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.65■■□□□ 1.86
CLDN1O95832 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.64■■□□□ 1.86
CLDN1O95832 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CLDN1O95832 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CLDN1O95832 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CLDN1O95832 DYNLL1-208ENST00000550178 581 ntBASIC26.54■■□□□ 1.84
CLDN1O95832 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CLDN1O95832 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.51■■□□□ 1.83
CLDN1O95832 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLDN1O95832 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CLDN1O95832 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.44■■□□□ 1.82
CLDN1O95832 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.44■■□□□ 1.82
CLDN1O95832 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.43■■□□□ 1.82
CLDN1O95832 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CLDN1O95832 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CLDN1O95832 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
CLDN1O95832 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CLDN1O95832 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.38■■□□□ 1.81
CLDN1O95832 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.35■■□□□ 1.81
CLDN1O95832 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CLDN1O95832 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.34■■□□□ 1.81
CLDN1O95832 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CLDN1O95832 AL031258.1-201ENST00000623562 325 ntBASIC26.32■■□□□ 1.8
CLDN1O95832 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC26.31■■□□□ 1.8
CLDN1O95832 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.31■■□□□ 1.8
CLDN1O95832 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN1O95832 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN1O95832 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.29■■□□□ 1.8
CLDN1O95832 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms