Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.074e-15■□□□□ 10.2
YBX3P16989 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.034e-15■□□□□ 10.2
YBX3P16989 NDUFV1-208ENST00000526770 1748 ntTSL 520.54■□□□□ 0.884e-15■□□□□ 10.2
YBX3P16989 NDUFV1-209ENST00000527355 679 ntTSL 220.51■□□□□ 0.874e-15■□□□□ 10.2
YBX3P16989 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.92■□□□□ 0.784e-15■□□□□ 10.2
YBX3P16989 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.764e-15■□□□□ 10.2
YBX3P16989 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.682e-9■□□□□ 10.2
YBX3P16989 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.27■□□□□ 0.682e-9■□□□□ 10.2
YBX3P16989 CNOT1-206ENST00000564557 582 ntTSL 317.76■□□□□ 0.435e-10■□□□□ 10.2
YBX3P16989 NDUFC2-KCTD14-201ENST00000528251 566 ntTSL 4 BASIC15.73■□□□□ 0.112e-9■□□□□ 10.2
YBX3P16989 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.062e-9■□□□□ 10.2
YBX3P16989 NDUFC2-KCTD14-204ENST00000614236 386 ntTSL 5 BASIC14.21□□□□□ -0.132e-9■□□□□ 10.2
YBX3P16989 NDUFC2-202ENST00000525085 495 ntTSL 3 BASIC13.24□□□□□ -0.292e-9■□□□□ 10.2
YBX3P16989 NDUFC2-205ENST00000534029 422 ntTSL 2 BASIC13.24□□□□□ -0.292e-9■□□□□ 10.2
YBX3P16989 NDUFC2-KCTD14-203ENST00000612612 530 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.342e-9■□□□□ 10.2
YBX3P16989 NDUFC2-203ENST00000527806 1888 ntTSL 2 BASIC12.56□□□□□ -0.42e-9■□□□□ 10.2
YBX3P16989 AP2A1-201ENST00000354293 3388 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.551e-8■□□□□ 10.2
YBX3P16989 EIF4A1-235ENST00000584860 1109 ntTSL 318.2■□□□□ 0.53e-10■□□□□ 10.2
YBX3P16989 NIPSNAP2-203ENST00000437587 818 ntTSL 526.76■■□□□ 1.879e-9■□□□□ 10.2
YBX3P16989 NIPSNAP2-204ENST00000446692 662 ntTSL 416.54■□□□□ 0.249e-9■□□□□ 10.2
YBX3P16989 NIPSNAP2-202ENST00000415967 872 ntTSL 38.69□□□□□ -1.029e-9■□□□□ 10.2
YBX3P16989 AP1M1-205ENST00000586543 642 ntTSL 515.83■□□□□ 0.127e-7■□□□□ 10.2
YBX3P16989 WDR1-213ENST00000509600 559 ntTSL 226.46■■□□□ 1.836e-9■□□□□ 10.2
YBX3P16989 HNRNPL-203ENST00000595164 2404 ntTSL 214.12□□□□□ -0.152e-7■□□□□ 10.2
YBX3P16989 HNRNPL-206ENST00000597731 3094 ntTSL 211.99□□□□□ -0.492e-7■□□□□ 10.2
YBX3P16989 GAS5-229ENST00000458220 469 ntTSL 28.5□□□□□ -1.051e-38■□□□□ 10.2
YBX3P16989 SLC7A8-203ENST00000397310 2719 ntTSL 210.94□□□□□ -0.666e-7■□□□□ 10.2
YBX3P16989 PPP2CA-204ENST00000495833 739 ntTSL 210.9□□□□□ -0.667e-9■□□□□ 10.2
YBX3P16989 PPP2CA-205ENST00000522385 585 ntTSL 38.56□□□□□ -1.047e-9■□□□□ 10.2
YBX3P16989 PPP2CA-206ENST00000523082 510 ntTSL 44.85□□□□□ -1.637e-9■□□□□ 10.2
YBX3P16989 PABPC4-205ENST00000421687 1663 ntTSL 517.26■□□□□ 0.354e-10■□□□□ 10.2
YBX3P16989 EIF3F-202ENST00000528653 739 ntTSL 217.01■□□□□ 0.312e-18■□□□□ 10.2
YBX3P16989 ZCCHC7-208ENST00000497924 699 ntTSL 29.95□□□□□ -0.822e-8■□□□□ 10.2
YBX3P16989 ZCCHC7-207ENST00000496099 721 ntTSL 37.67□□□□□ -1.182e-8■□□□□ 10.2
YBX3P16989 ZCCHC7-205ENST00000481507 903 ntTSL 26.9□□□□□ -1.32e-8■□□□□ 10.2
YBX3P16989 EIF3F-207ENST00000532882 454 ntTSL 23.42□□□□□ -1.862e-18■□□□□ 10.2
YBX3P16989 FTL-201ENST00000331825 878 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.045e-47■□□□□ 10.2
YBX3P16989 ZHX1-207ENST00000524267 614 ntTSL 418.33■□□□□ 0.521e-9■□□□□ 10.2
YBX3P16989 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.821e-19■□□□□ 10.2
YBX3P16989 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.392e-6■□□□□ 10.2
YBX3P16989 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.442e-6■□□□□ 10.2
YBX3P16989 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.572e-6■□□□□ 10.2
YBX3P16989 PCBP2-217ENST00000550520 753 ntTSL 314.13□□□□□ -0.152e-24■□□□□ 10.2
YBX3P16989 PCBP2-221ENST00000551104 681 ntTSL 311.07□□□□□ -0.642e-24■□□□□ 10.2
YBX3P16989 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.093e-9■□□□□ 10.2
YBX3P16989 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.23e-9■□□□□ 10.2
YBX3P16989 RPL15-204ENST00000413699 2053 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.283e-9■□□□□ 10.2
YBX3P16989 RPL15-210ENST00000456530 2835 ntTSL 1 (best) BASIC12.99□□□□□ -0.333e-9■□□□□ 10.2
YBX3P16989 LCP1-203ENST00000416500 819 ntTSL 311.4□□□□□ -0.586e-7■□□□□ 10.2
YBX3P16989 WDR1-216ENST00000514319 719 ntTSL 518.57■□□□□ 0.564e-9■□□□□ 10.1
YBX3P16989 RTN3-207ENST00000536011 992 ntTSL 217.7■□□□□ 0.422e-9■□□□□ 10.1
YBX3P16989 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.38■□□□□ 0.212e-9■□□□□ 10.1
YBX3P16989 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC16.03■□□□□ 0.162e-9■□□□□ 10.1
YBX3P16989 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC14.81□□□□□ -0.042e-9■□□□□ 10.1
YBX3P16989 NUP43-203ENST00000367404 1089 ntTSL 2 BASIC13.76□□□□□ -0.211e-8■□□□□ 10.1
YBX3P16989 NUP43-204ENST00000403890 1012 ntTSL 213.6□□□□□ -0.231e-8■□□□□ 10.1
YBX3P16989 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC13□□□□□ -0.332e-9■□□□□ 10.1
YBX3P16989 NUP43-202ENST00000367402 882 ntTSL 212.53□□□□□ -0.41e-8■□□□□ 10.1
YBX3P16989 RTN3-208ENST00000537981 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.692e-9■□□□□ 10.1
YBX3P16989 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC10.64□□□□□ -0.712e-9■□□□□ 10.1
YBX3P16989 NUP43-206ENST00000543637 576 ntTSL 59.53□□□□□ -0.881e-8■□□□□ 10.1
YBX3P16989 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC8.83□□□□□ -12e-9■□□□□ 10.1
YBX3P16989 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.061e-6■□□□□ 10.1
YBX3P16989 GRK2-214ENST00000534651 424 ntTSL 317.59■□□□□ 0.413e-9■□□□□ 10.1
YBX3P16989 KYAT3-201ENST00000260508 2070 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.153e-6■□□□□ 10.1
YBX3P16989 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.74□□□□□ -1.493e-6■□□□□ 10.1
YBX3P16989 KYAT3-204ENST00000446900 1937 ntTSL 55.02□□□□□ -1.613e-6■□□□□ 10.1
YBX3P16989 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.015e-8■□□□□ 10.1
YBX3P16989 FANCI-214ENST00000567996 1070 ntTSL 1 (best) BASIC16.17■□□□□ 0.185e-6■□□□□ 10.1
YBX3P16989 PBK-202ENST00000521226 748 ntTSL 37.34□□□□□ -1.232e-6■□□□□ 10.1
YBX3P16989 FANCI-217ENST00000570225 526 ntTSL 36.33□□□□□ -1.45e-6■□□□□ 10.1
YBX3P16989 SERPIND1-201ENST00000215727 2437 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.077e-12■□□□□ 10.1
YBX3P16989 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.131e-19■□□□□ 10.1
YBX3P16989 PEG10-203ENST00000488574 2587 ntTSL 2 BASIC13.56□□□□□ -0.241e-19■□□□□ 10.1
YBX3P16989 EIF2A-207ENST00000469331 553 ntTSL 25.85□□□□□ -1.471e-15■□□□□ 10.1
YBX3P16989 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.111e-48■□□□□ 10.1
YBX3P16989 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.671e-48■□□□□ 10.1
YBX3P16989 NPM1-208ENST00000521672 597 ntTSL 510.23□□□□□ -0.771e-48■□□□□ 10.1
YBX3P16989 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC8.5□□□□□ -1.051e-48■□□□□ 10.1
YBX3P16989 NPM1-205ENST00000518587 670 ntTSL 28.41□□□□□ -1.061e-48■□□□□ 10.1
YBX3P16989 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.61□□□□□ -1.351e-48■□□□□ 10.1
YBX3P16989 NPM1-211ENST00000523622 247 ntTSL 36.46□□□□□ -1.381e-48■□□□□ 10.1
YBX3P16989 NPM1-210ENST00000523339 268 ntTSL 25.63□□□□□ -1.511e-48■□□□□ 10.1
YBX3P16989 PCBP2-220ENST00000550910 449 ntTSL 36.03□□□□□ -1.443e-24■□□□□ 10.1
YBX3P16989 CNOT1-219ENST00000569882 831 ntTSL 36.2□□□□□ -1.424e-11■□□□□ 10.1
YBX3P16989 NOP53-208ENST00000598959 501 ntTSL 514.69□□□□□ -0.067e-11■□□□□ 10.1
YBX3P16989 EIF3D-201ENST00000216190 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.486e-10■□□□□ 10.1
YBX3P16989 GRK2-211ENST00000532099 886 ntTSL 317.84■□□□□ 0.451e-8■□□□□ 10.1
YBX3P16989 GRK2-213ENST00000533077 3453 ntTSL 210.88□□□□□ -0.671e-8■□□□□ 10.1
YBX3P16989 DNAJA1-202ENST00000465677 505 ntTSL 26.09□□□□□ -1.432e-9■□□□□ 10.1
YBX3P16989 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.98■□□□□ 0.632e-35■□□□□ 10.1
YBX3P16989 uc_338.2-201ENST00000612963 182 ntBASIC11.25□□□□□ -0.612e-35■□□□□ 10.1
YBX3P16989 RACK1-214ENST00000507000 685 ntTSL 59.36□□□□□ -0.918e-44■□□□□ 10.1
YBX3P16989 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.64■□□□□ 0.737e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.597e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.15□□□□□ -0.147e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-220ENST00000531382 2359 ntTSL 2 BASIC13.75□□□□□ -0.217e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-206ENST00000438977 639 ntTSL 312.95□□□□□ -0.347e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-216ENST00000530003 3023 ntTSL 5 BASIC10.96□□□□□ -0.667e-7■□□□□ 10.1
YBX3P16989 RPS6KA1-202ENST00000374163 3202 ntTSL 210.78□□□□□ -0.687e-7■□□□□ 10.1
Retrieved 100 of 29,075 protein–RNA pairs in 239 ms