RNA–Protein interactions for RNA: ENST00000564557.1

CNOT1-206, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-206ENST00000564557 NISCHQ9Y2I1 1504 aa33.05■■■□□ 2.88
CNOT1-206ENST00000564557 AEBP2Q6ZN18 517 aaPredicted RBP30.71■■■□□ 2.51
CNOT1-206ENST00000564557 CHIC1Q5VXU3 224 aa29.74■■■□□ 2.35
CNOT1-206ENST00000564557 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
CNOT1-206ENST00000564557 ABCC9O60706 1549 aa28.97■■■□□ 2.23
CNOT1-206ENST00000564557 DCAF8L2P0C7V8 631 aa27.9■■■□□ 2.06
CNOT1-206ENST00000564557 RB1CC1Q8TDY2 1594 aa27.8■■■□□ 2.04
CNOT1-206ENST00000564557 NACADO15069 1562 aa27.73■■■□□ 2.03
CNOT1-206ENST00000564557 ZCCHC6Q5VYS8 1495 aaKnown RBP27.48■■□□□ 1.99
CNOT1-206ENST00000564557 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
CNOT1-206ENST00000564557 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
CNOT1-206ENST00000564557 PABPN1Q86U42 306 aaKnown RBP eCLIP27.1■■□□□ 1.93
CNOT1-206ENST00000564557 UNC13AQ9UPW8 1703 aa27.07■■□□□ 1.92
CNOT1-206ENST00000564557 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
CNOT1-206ENST00000564557 BICRAQ9NZM4 1560 aa26.86■■□□□ 1.89
CNOT1-206ENST00000564557 DNAJC5BQ9UF47 199 aa26.64■■□□□ 1.86
CNOT1-206ENST00000564557 SHROOM4Q9ULL8 1493 aa26.62■■□□□ 1.85
CNOT1-206ENST00000564557 EIF4G1Q04637 1599 aaKnown RBP26.22■■□□□ 1.79
CNOT1-206ENST00000564557 CC2D2AQ9P2K1 1620 aa26.16■■□□□ 1.78
CNOT1-206ENST00000564557 PHF23Q9BUL5 403 aaPredicted RBP26.14■■□□□ 1.78
CNOT1-206ENST00000564557 SENP3Q9H4L4 574 aaPredicted RBP26.08■■□□□ 1.77
CNOT1-206ENST00000564557 CECR2Q9BXF3 1484 aa26.04■■□□□ 1.76
CNOT1-206ENST00000564557 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
CNOT1-206ENST00000564557 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
CNOT1-206ENST00000564557 NCAPD3P42695 1498 aa25.57■■□□□ 1.68
CNOT1-206ENST00000564557 ATAD2BQ9ULI0 1458 aa25.57■■□□□ 1.68
CNOT1-206ENST00000564557 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
CNOT1-206ENST00000564557 MROH2BQ7Z745 1585 aa25.46■■□□□ 1.67
CNOT1-206ENST00000564557 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
CNOT1-206ENST00000564557 BAZ1BQ9UIG0 1483 aaKnown RBP25.4■■□□□ 1.66
CNOT1-206ENST00000564557 PEG3Q9GZU2 1588 aa25.37■■□□□ 1.65
CNOT1-206ENST00000564557 WIZO95785 1651 aa25.19■■□□□ 1.62
CNOT1-206ENST00000564557 RSF1Q96T23 1441 aaPredicted RBP25.14■■□□□ 1.62
CNOT1-206ENST00000564557 ERCC6Q03468 1493 aa25.05■■□□□ 1.6
CNOT1-206ENST00000564557 NESP48681 1621 aa24.99■■□□□ 1.59
CNOT1-206ENST00000564557 LAMC3Q9Y6N6 1575 aa24.93■■□□□ 1.58
CNOT1-206ENST00000564557 TOP2AP11388 1531 aaKnown RBP24.92■■□□□ 1.58
CNOT1-206ENST00000564557 CADPSQ9ULU8 1353 aa24.86■■□□□ 1.57
CNOT1-206ENST00000564557 PDS5BQ9NTI5 1447 aa24.84■■□□□ 1.57
CNOT1-206ENST00000564557 CUX2O14529 1486 aa24.74■■□□□ 1.55
CNOT1-206ENST00000564557 KIF21AQ7Z4S6 1674 aa24.68■■□□□ 1.54
CNOT1-206ENST00000564557 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
CNOT1-206ENST00000564557 CFTRP13569 1480 aa24.64■■□□□ 1.54
CNOT1-206ENST00000564557 SUPT5HO00267 1087 aaKnown RBP24.59■■□□□ 1.53
CNOT1-206ENST00000564557 THOC2Q8NI27 1593 aaKnown RBP24.59■■□□□ 1.53
CNOT1-206ENST00000564557 FANCD2Q9BXW9 1451 aa24.57■■□□□ 1.52
CNOT1-206ENST00000564557 CEP164Q9UPV0 1460 aa24.57■■□□□ 1.52
CNOT1-206ENST00000564557 MRC2Q9UBG0 1479 aa24.53■■□□□ 1.52
CNOT1-206ENST00000564557 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
CNOT1-206ENST00000564557 WDR62O43379 1518 aa24.4■■□□□ 1.5
CNOT1-206ENST00000564557 URB2Q14146 1524 aaKnown RBP24.28■■□□□ 1.48
CNOT1-206ENST00000564557 FOXD1Q16676 465 aa24.24■■□□□ 1.47
CNOT1-206ENST00000564557 ABCC8Q09428 1581 aa24.2■■□□□ 1.46
CNOT1-206ENST00000564557 DNAJC5Q9H3Z4 198 aa24.16■■□□□ 1.46
CNOT1-206ENST00000564557 TOPBP1Q92547 1522 aa24.14■■□□□ 1.45
CNOT1-206ENST00000564557 DNMBPQ6XZF7 1577 aa24.1■■□□□ 1.45
CNOT1-206ENST00000564557 IFT140Q96RY7 1462 aa24.05■■□□□ 1.44
CNOT1-206ENST00000564557 PLPPR3Q6T4P5 718 aa24.04■■□□□ 1.44
CNOT1-206ENST00000564557 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
CNOT1-206ENST00000564557 ZNF608Q9ULD9 1512 aaPredicted RBP23.9■■□□□ 1.42
CNOT1-206ENST00000564557 SOGA1O94964 1423 aa23.89■■□□□ 1.41
CNOT1-206ENST00000564557 CUX1P39880 1505 aa23.89■■□□□ 1.41
CNOT1-206ENST00000564557 FGD5Q6ZNL6 1462 aa23.87■■□□□ 1.41
CNOT1-206ENST00000564557 RAD54L2Q9Y4B4 1467 aa23.84■■□□□ 1.41
CNOT1-206ENST00000564557 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
CNOT1-206ENST00000564557 EIF4G3O43432 1585 aaKnown RBP23.8■■□□□ 1.4
CNOT1-206ENST00000564557 OSCARQ8IYS5 282 aa23.8■■□□□ 1.4
CNOT1-206ENST00000564557 AQRO60306 1485 aaKnown RBP eCLIP23.8■■□□□ 1.48e-7■■■■■ 28.7
CNOT1-206ENST00000564557 TDRD9Q8NDG6 1382 aaKnown RBP23.77■■□□□ 1.4
CNOT1-206ENST00000564557 WRNQ14191 1432 aaPredicted RBP eCLIP23.76■■□□□ 1.39
CNOT1-206ENST00000564557 FBLN2P98095 1184 aa23.68■■□□□ 1.38
CNOT1-206ENST00000564557 WDR97A6NE52 1622 aa23.68■■□□□ 1.38
CNOT1-206ENST00000564557 TOP2BQ02880 1626 aa23.66■■□□□ 1.38
CNOT1-206ENST00000564557 BIVM-ERCC5R4GMW8 1640 aa23.64■■□□□ 1.38
CNOT1-206ENST00000564557 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
CNOT1-206ENST00000564557 ABCA10Q8WWZ4 1543 aa23.61■■□□□ 1.37
CNOT1-206ENST00000564557 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
CNOT1-206ENST00000564557 GAPVD1Q14C86 1478 aa23.59■■□□□ 1.37
CNOT1-206ENST00000564557 SNAPC4Q5SXM2 1469 aa23.57■■□□□ 1.36
CNOT1-206ENST00000564557 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
CNOT1-206ENST00000564557 MAGI1Q96QZ7 1491 aaPredicted RBP23.54■■□□□ 1.36
CNOT1-206ENST00000564557 CHD1O14646 1710 aa23.53■■□□□ 1.36
CNOT1-206ENST00000564557 PBRM1Q86U86 1689 aa23.5■■□□□ 1.35
CNOT1-206ENST00000564557 ABCA5Q8WWZ7 1642 aa23.49■■□□□ 1.35
CNOT1-206ENST00000564557 SYNJ2O15056 1496 aa23.45■■□□□ 1.34
CNOT1-206ENST00000564557 TRIM41Q8WV44 630 aa23.41■■□□□ 1.34
CNOT1-206ENST00000564557 ERICH3Q5RHP9 1530 aa23.34■■□□□ 1.33
CNOT1-206ENST00000564557 FHAD1B1AJZ9 1412 aa23.32■■□□□ 1.32
CNOT1-206ENST00000564557 KIF27Q86VH2 1401 aa23.31■■□□□ 1.32
CNOT1-206ENST00000564557 RIMBP3CA6NJZ7 1639 aa23.3■■□□□ 1.32
CNOT1-206ENST00000564557 RIMBP3BA6NNM3 1639 aa23.3■■□□□ 1.32
CNOT1-206ENST00000564557 RIMBP3Q9UFD9 1639 aa23.3■■□□□ 1.32
CNOT1-206ENST00000564557 ARHGEF11O15085 1522 aa23.3■■□□□ 1.32
CNOT1-206ENST00000564557 ADAMTS12P58397 1594 aa23.29■■□□□ 1.32
CNOT1-206ENST00000564557 GRIN2AQ12879 1464 aa23.27■■□□□ 1.32
CNOT1-206ENST00000564557 CLASP1Q7Z460 1538 aa23.23■■□□□ 1.31
CNOT1-206ENST00000564557 CYB5RLQ6IPT4 315 aa23.21■■□□□ 1.31
CNOT1-206ENST00000564557 IGF1RP08069 1367 aa23.18■■□□□ 1.3
CNOT1-206ENST00000564557 PPP6R1Q9UPN7 881 aa23.15■■□□□ 1.3
CNOT1-206ENST00000564557 NUP160Q12769 1436 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms