RNA–Protein interactions for RNA: ENST00000543637.1

NUP43-206, Transcript of nucleoporin 43, humanhuman

TSL 5

Gene NUP43, Length 576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP43-206ENST00000543637 NISCHQ9Y2I1 1504 aa17.49■□□□□ 0.39
NUP43-206ENST00000543637 CCDC180Q9P1Z9 1646 aa15.68■□□□□ 0.1
NUP43-206ENST00000543637 ABCC9O60706 1549 aa15.55■□□□□ 0.08
NUP43-206ENST00000543637 RB1CC1Q8TDY2 1594 aa14.9□□□□□ -0.02
NUP43-206ENST00000543637 DCAF8L2P0C7V8 631 aa14.89□□□□□ -0.03
NUP43-206ENST00000543637 NACADO15069 1562 aa14.8□□□□□ -0.04
NUP43-206ENST00000543637 AEBP2Q6ZN18 517 aaPredicted RBP14.67□□□□□ -0.06
NUP43-206ENST00000543637 MYO15BQ96JP2 1530 aa14.59□□□□□ -0.07
NUP43-206ENST00000543637 UNC13AQ9UPW8 1703 aa14.56□□□□□ -0.08
NUP43-206ENST00000543637 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
NUP43-206ENST00000543637 ZCCHC6Q5VYS8 1495 aaKnown RBP14.48□□□□□ -0.09
NUP43-206ENST00000543637 DCAF1Q9Y4B6 1507 aa14.45□□□□□ -0.1
NUP43-206ENST00000543637 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
NUP43-206ENST00000543637 BICRAQ9NZM4 1560 aa14.35□□□□□ -0.11
NUP43-206ENST00000543637 SCRIBQ14160 1630 aa14.28□□□□□ -0.12
NUP43-206ENST00000543637 SHROOM4Q9ULL8 1493 aa14.21□□□□□ -0.13
NUP43-206ENST00000543637 CC2D2AQ9P2K1 1620 aa14.06□□□□□ -0.16
NUP43-206ENST00000543637 EIF4G1Q04637 1599 aaKnown RBP14.04□□□□□ -0.16
NUP43-206ENST00000543637 CECR2Q9BXF3 1484 aa13.99□□□□□ -0.17
NUP43-206ENST00000543637 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
NUP43-206ENST00000543637 NCAPD3P42695 1498 aa13.63□□□□□ -0.23
NUP43-206ENST00000543637 SMARCA4P51532 1647 aa13.63□□□□□ -0.23
NUP43-206ENST00000543637 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
NUP43-206ENST00000543637 BAZ1AQ9NRL2 1556 aaPredicted RBP13.61□□□□□ -0.23
NUP43-206ENST00000543637 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
NUP43-206ENST00000543637 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
NUP43-206ENST00000543637 BAZ1BQ9UIG0 1483 aaKnown RBP13.51□□□□□ -0.25
NUP43-206ENST00000543637 ERCC6Q03468 1493 aa13.47□□□□□ -0.25
NUP43-206ENST00000543637 MROH2BQ7Z745 1585 aa13.46□□□□□ -0.25
NUP43-206ENST00000543637 PEG3Q9GZU2 1588 aa13.46□□□□□ -0.25
NUP43-206ENST00000543637 CUX2O14529 1486 aa13.36□□□□□ -0.27
NUP43-206ENST00000543637 NESP48681 1621 aa13.36□□□□□ -0.27
NUP43-206ENST00000543637 WIZO95785 1651 aa13.36□□□□□ -0.27
NUP43-206ENST00000543637 LAMC3Q9Y6N6 1575 aa13.35□□□□□ -0.27
NUP43-206ENST00000543637 PDS5BQ9NTI5 1447 aa13.28□□□□□ -0.28
NUP43-206ENST00000543637 KIF21AQ7Z4S6 1674 aa13.25□□□□□ -0.29
NUP43-206ENST00000543637 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
NUP43-206ENST00000543637 DNAJC5Q9H3Z4 198 aa13.23□□□□□ -0.29
NUP43-206ENST00000543637 RSF1Q96T23 1441 aaPredicted RBP13.22□□□□□ -0.29
NUP43-206ENST00000543637 THOC2Q8NI27 1593 aaKnown RBP13.19□□□□□ -0.3
NUP43-206ENST00000543637 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
NUP43-206ENST00000543637 MRC2Q9UBG0 1479 aa13.11□□□□□ -0.31
NUP43-206ENST00000543637 CEP164Q9UPV0 1460 aa13.1□□□□□ -0.31
NUP43-206ENST00000543637 CFTRP13569 1480 aa13.09□□□□□ -0.31
NUP43-206ENST00000543637 FANCD2Q9BXW9 1451 aa13.09□□□□□ -0.31
NUP43-206ENST00000543637 PRDM2Q13029 1718 aa13.07□□□□□ -0.32
NUP43-206ENST00000543637 WDR62O43379 1518 aa13.04□□□□□ -0.32
NUP43-206ENST00000543637 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
NUP43-206ENST00000543637 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
NUP43-206ENST00000543637 ABCC8Q09428 1581 aa12.9□□□□□ -0.34
NUP43-206ENST00000543637 SUPT5HO00267 1087 aaKnown RBP12.86□□□□□ -0.35
NUP43-206ENST00000543637 OSCARQ8IYS5 282 aa12.85□□□□□ -0.35
NUP43-206ENST00000543637 TOPBP1Q92547 1522 aa12.84□□□□□ -0.35
NUP43-206ENST00000543637 IFT140Q96RY7 1462 aa12.83□□□□□ -0.36
NUP43-206ENST00000543637 DNMBPQ6XZF7 1577 aa12.81□□□□□ -0.36
NUP43-206ENST00000543637 TRIM41Q8WV44 630 aa12.76□□□□□ -0.37
NUP43-206ENST00000543637 ZNF608Q9ULD9 1512 aaPredicted RBP12.74□□□□□ -0.37
NUP43-206ENST00000543637 SOGA1O94964 1423 aa12.71□□□□□ -0.37
NUP43-206ENST00000543637 TARBP1Q13395 1621 aaKnown RBP12.71□□□□□ -0.37
NUP43-206ENST00000543637 EIF4G3O43432 1585 aaKnown RBP12.71□□□□□ -0.37
NUP43-206ENST00000543637 FBLN2P98095 1184 aa12.7□□□□□ -0.38
NUP43-206ENST00000543637 AQRO60306 1485 aaKnown RBP eCLIP12.7□□□□□ -0.38
NUP43-206ENST00000543637 POLA1P09884 1462 aaPredicted RBP12.7□□□□□ -0.38
NUP43-206ENST00000543637 RAD54L2Q9Y4B4 1467 aa12.66□□□□□ -0.38
NUP43-206ENST00000543637 FGD5Q6ZNL6 1462 aa12.65□□□□□ -0.38
NUP43-206ENST00000543637 CHD1O14646 1710 aa12.65□□□□□ -0.38
NUP43-206ENST00000543637 TDRD9Q8NDG6 1382 aaKnown RBP12.64□□□□□ -0.39
NUP43-206ENST00000543637 CUX1P39880 1505 aa12.63□□□□□ -0.39
NUP43-206ENST00000543637 WDR97A6NE52 1622 aa12.63□□□□□ -0.39
NUP43-206ENST00000543637 CHMP7Q8WUX9 453 aaPredicted RBP12.61□□□□□ -0.39
NUP43-206ENST00000543637 RIMBP3CA6NJZ7 1639 aa12.59□□□□□ -0.39
NUP43-206ENST00000543637 RIMBP3BA6NNM3 1639 aa12.59□□□□□ -0.39
NUP43-206ENST00000543637 RIMBP3Q9UFD9 1639 aa12.59□□□□□ -0.39
NUP43-206ENST00000543637 GRIN2BQ13224 1484 aa12.57□□□□□ -0.4
NUP43-206ENST00000543637 PBRM1Q86U86 1689 aa12.56□□□□□ -0.4
NUP43-206ENST00000543637 SNAPC4Q5SXM2 1469 aa12.55□□□□□ -0.4
NUP43-206ENST00000543637 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
NUP43-206ENST00000543637 MAGI1Q96QZ7 1491 aaPredicted RBP12.54□□□□□ -0.4
NUP43-206ENST00000543637 ARHGEF11O15085 1522 aa12.54□□□□□ -0.4
NUP43-206ENST00000543637 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
NUP43-206ENST00000543637 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
NUP43-206ENST00000543637 ABCA10Q8WWZ4 1543 aa12.52□□□□□ -0.41
NUP43-206ENST00000543637 SYNJ1O43426 1573 aa12.52□□□□□ -0.41
NUP43-206ENST00000543637 BIVM-ERCC5R4GMW8 1640 aa12.51□□□□□ -0.41
NUP43-206ENST00000543637 TOP2BQ02880 1626 aa12.51□□□□□ -0.41
NUP43-206ENST00000543637 SYNJ2O15056 1496 aa12.49□□□□□ -0.41
NUP43-206ENST00000543637 ABCA5Q8WWZ7 1642 aa12.48□□□□□ -0.41
NUP43-206ENST00000543637 SENP3Q9H4L4 574 aaPredicted RBP12.46□□□□□ -0.41
NUP43-206ENST00000543637 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
NUP43-206ENST00000543637 TRHP20396 242 aaPredicted RBP12.41□□□□□ -0.42
NUP43-206ENST00000543637 ARAP1Q96P48 1450 aa12.4□□□□□ -0.43
NUP43-206ENST00000543637 GRIN2AQ12879 1464 aa12.39□□□□□ -0.43
NUP43-206ENST00000543637 FHAD1B1AJZ9 1412 aa12.38□□□□□ -0.43
NUP43-206ENST00000543637 ERICH3Q5RHP9 1530 aa12.38□□□□□ -0.43
NUP43-206ENST00000543637 ADAMTS12P58397 1594 aa12.36□□□□□ -0.43
NUP43-206ENST00000543637 PHF23Q9BUL5 403 aaPredicted RBP12.33□□□□□ -0.44
NUP43-206ENST00000543637 CEP170Q5SW79 1584 aa12.31□□□□□ -0.44
NUP43-206ENST00000543637 NUP160Q12769 1436 aa12.3□□□□□ -0.44
NUP43-206ENST00000543637 KIF27Q86VH2 1401 aa12.3□□□□□ -0.44
NUP43-206ENST00000543637 JPH4Q96JJ6 628 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms