RNA–Protein interactions for RNA: ENST00000528653.1

EIF3F-202, Transcript of eukaryotic translation initiation factor 3 subunit F, humanhuman

TSL 2

Gene EIF3F, Length 739 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3F-202ENST00000528653 NISCHQ9Y2I1 1504 aa32.59■■■□□ 2.81
EIF3F-202ENST00000528653 CCDC180Q9P1Z9 1646 aa28.84■■■□□ 2.21
EIF3F-202ENST00000528653 ABCC9O60706 1549 aa27.86■■■□□ 2.05
EIF3F-202ENST00000528653 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
EIF3F-202ENST00000528653 DCAF8L2P0C7V8 631 aa27.03■■□□□ 1.92
EIF3F-202ENST00000528653 NACADO15069 1562 aa26.98■■□□□ 1.91
EIF3F-202ENST00000528653 DCAF1Q9Y4B6 1507 aa26.96■■□□□ 1.91
EIF3F-202ENST00000528653 RB1CC1Q8TDY2 1594 aa26.94■■□□□ 1.9
EIF3F-202ENST00000528653 MYO15BQ96JP2 1530 aa26.91■■□□□ 1.9
EIF3F-202ENST00000528653 UNC13AQ9UPW8 1703 aa26.39■■□□□ 1.81
EIF3F-202ENST00000528653 SCRIBQ14160 1630 aa26.39■■□□□ 1.81
EIF3F-202ENST00000528653 BICRAQ9NZM4 1560 aa26.12■■□□□ 1.77
EIF3F-202ENST00000528653 DNAJC5BQ9UF47 199 aa26.11■■□□□ 1.77
EIF3F-202ENST00000528653 PABPN1Q86U42 306 aaKnown RBP eCLIP26.04■■□□□ 1.76
EIF3F-202ENST00000528653 SHROOM4Q9ULL8 1493 aa26.03■■□□□ 1.76
EIF3F-202ENST00000528653 EIF4G1Q04637 1599 aaKnown RBP25.4■■□□□ 1.66
EIF3F-202ENST00000528653 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
EIF3F-202ENST00000528653 BAZ1AQ9NRL2 1556 aaPredicted RBP25.25■■□□□ 1.63
EIF3F-202ENST00000528653 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
EIF3F-202ENST00000528653 CC2D2AQ9P2K1 1620 aa25.21■■□□□ 1.63
EIF3F-202ENST00000528653 MROH2BQ7Z745 1585 aa25.15■■□□□ 1.62
EIF3F-202ENST00000528653 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
EIF3F-202ENST00000528653 SMARCA2P51531 1590 aa24.97■■□□□ 1.59
EIF3F-202ENST00000528653 RSF1Q96T23 1441 aaPredicted RBP24.96■■□□□ 1.59
EIF3F-202ENST00000528653 PEG3Q9GZU2 1588 aa24.96■■□□□ 1.59
EIF3F-202ENST00000528653 WIZO95785 1651 aa24.91■■□□□ 1.58
EIF3F-202ENST00000528653 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
EIF3F-202ENST00000528653 HMGXB3Q12766 1538 aa24.83■■□□□ 1.57
EIF3F-202ENST00000528653 BAZ1BQ9UIG0 1483 aaKnown RBP24.81■■□□□ 1.56
EIF3F-202ENST00000528653 TOP2AP11388 1531 aaKnown RBP24.67■■□□□ 1.54
EIF3F-202ENST00000528653 SUPT5HO00267 1087 aaKnown RBP24.63■■□□□ 1.53
EIF3F-202ENST00000528653 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
EIF3F-202ENST00000528653 NESP48681 1621 aa24.22■■□□□ 1.47
EIF3F-202ENST00000528653 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
EIF3F-202ENST00000528653 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
EIF3F-202ENST00000528653 CFTRP13569 1480 aa24.12■■□□□ 1.45
EIF3F-202ENST00000528653 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
EIF3F-202ENST00000528653 PDS5BQ9NTI5 1447 aa23.98■■□□□ 1.43
EIF3F-202ENST00000528653 ERCC6Q03468 1493 aa23.97■■□□□ 1.43
EIF3F-202ENST00000528653 KIF21AQ7Z4S6 1674 aa23.97■■□□□ 1.43
EIF3F-202ENST00000528653 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
EIF3F-202ENST00000528653 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
EIF3F-202ENST00000528653 DNAJC5Q9H3Z4 198 aa23.85■■□□□ 1.41
EIF3F-202ENST00000528653 CUX2O14529 1486 aa23.85■■□□□ 1.41
EIF3F-202ENST00000528653 THOC2Q8NI27 1593 aaKnown RBP23.79■■□□□ 1.4
EIF3F-202ENST00000528653 MRC2Q9UBG0 1479 aa23.76■■□□□ 1.39
EIF3F-202ENST00000528653 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
EIF3F-202ENST00000528653 WDR62O43379 1518 aa23.67■■□□□ 1.38
EIF3F-202ENST00000528653 ABCC8Q09428 1581 aa23.62■■□□□ 1.37
EIF3F-202ENST00000528653 DNMBPQ6XZF7 1577 aa23.61■■□□□ 1.37
EIF3F-202ENST00000528653 TOPBP1Q92547 1522 aa23.6■■□□□ 1.37
EIF3F-202ENST00000528653 CUX1P39880 1505 aa23.58■■□□□ 1.36
EIF3F-202ENST00000528653 WRNQ14191 1432 aaPredicted RBP eCLIP23.55■■□□□ 1.36
EIF3F-202ENST00000528653 SYNJ1O43426 1573 aa23.52■■□□□ 1.36
EIF3F-202ENST00000528653 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
EIF3F-202ENST00000528653 TOP2BQ02880 1626 aa23.47■■□□□ 1.35
EIF3F-202ENST00000528653 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
EIF3F-202ENST00000528653 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
EIF3F-202ENST00000528653 IFT140Q96RY7 1462 aa23.34■■□□□ 1.33
EIF3F-202ENST00000528653 RAD54L2Q9Y4B4 1467 aa23.32■■□□□ 1.32
EIF3F-202ENST00000528653 TARBP1Q13395 1621 aaKnown RBP23.32■■□□□ 1.32
EIF3F-202ENST00000528653 SOGA1O94964 1423 aa23.29■■□□□ 1.32
EIF3F-202ENST00000528653 WDR97A6NE52 1622 aa23.26■■□□□ 1.31
EIF3F-202ENST00000528653 ZNF608Q9ULD9 1512 aaPredicted RBP23.23■■□□□ 1.31
EIF3F-202ENST00000528653 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
EIF3F-202ENST00000528653 ABCA10Q8WWZ4 1543 aa23.2■■□□□ 1.3
EIF3F-202ENST00000528653 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
EIF3F-202ENST00000528653 CHIC1Q5VXU3 224 aa23.18■■□□□ 1.3
EIF3F-202ENST00000528653 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.29
EIF3F-202ENST00000528653 ABCA5Q8WWZ7 1642 aa23.12■■□□□ 1.29
EIF3F-202ENST00000528653 AQRO60306 1485 aaKnown RBP eCLIP23.11■■□□□ 1.293e-7■■■■■ 34
EIF3F-202ENST00000528653 GAPVD1Q14C86 1478 aa23.05■■□□□ 1.28
EIF3F-202ENST00000528653 PBRM1Q86U86 1689 aa23.05■■□□□ 1.28
EIF3F-202ENST00000528653 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
EIF3F-202ENST00000528653 GRIN2BQ13224 1484 aa23■■□□□ 1.27
EIF3F-202ENST00000528653 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
EIF3F-202ENST00000528653 RUSC2Q8N2Y8 1516 aa22.95■■□□□ 1.26
EIF3F-202ENST00000528653 ERICH3Q5RHP9 1530 aa22.93■■□□□ 1.26
EIF3F-202ENST00000528653 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
EIF3F-202ENST00000528653 ADAMTS12P58397 1594 aa22.89■■□□□ 1.25
EIF3F-202ENST00000528653 CHD1O14646 1710 aa22.83■■□□□ 1.25
EIF3F-202ENST00000528653 IGF1RP08069 1367 aa22.83■■□□□ 1.25
EIF3F-202ENST00000528653 CUL7Q14999 1698 aa22.83■■□□□ 1.24
EIF3F-202ENST00000528653 EEA1Q15075 1411 aa22.82■■□□□ 1.24
EIF3F-202ENST00000528653 SYNJ2O15056 1496 aa22.8■■□□□ 1.24
EIF3F-202ENST00000528653 FHAD1B1AJZ9 1412 aa22.8■■□□□ 1.24
EIF3F-202ENST00000528653 FAM9AQ8IZU1 332 aaPredicted RBP22.77■■□□□ 1.24
EIF3F-202ENST00000528653 FBLN2P98095 1184 aa22.74■■□□□ 1.23
EIF3F-202ENST00000528653 OSCARQ8IYS5 282 aa22.74■■□□□ 1.23
EIF3F-202ENST00000528653 GRIN2AQ12879 1464 aa22.73■■□□□ 1.23
EIF3F-202ENST00000528653 CHMP7Q8WUX9 453 aaPredicted RBP22.72■■□□□ 1.23
EIF3F-202ENST00000528653 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
EIF3F-202ENST00000528653 CSRNP3Q8WYN3 585 aa22.69■■□□□ 1.22
EIF3F-202ENST00000528653 PRXQ9BXM0 1461 aa22.66■■□□□ 1.22
EIF3F-202ENST00000528653 RAPGEF2Q9Y4G8 1499 aa22.65■■□□□ 1.22
EIF3F-202ENST00000528653 CEP170Q5SW79 1584 aa22.62■■□□□ 1.21
EIF3F-202ENST00000528653 KIF21BO75037 1637 aa22.6■■□□□ 1.21
EIF3F-202ENST00000528653 NUP160Q12769 1436 aa22.59■■□□□ 1.21
EIF3F-202ENST00000528653 CLASP1Q7Z460 1538 aa22.56■■□□□ 1.2
EIF3F-202ENST00000528653 RIMBP3CA6NJZ7 1639 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms