RNA–Protein interactions for RNA: ENST00000403890.7

NUP43-204, Transcript of nucleoporin 43, humanhuman

TSL 2

Gene NUP43, Length 1,012 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP43-204ENST00000403890 AEBP2Q6ZN18 517 aaPredicted RBP26.78■■□□□ 1.88
NUP43-204ENST00000403890 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.66
NUP43-204ENST00000403890 NISCHQ9Y2I1 1504 aa23.85■■□□□ 1.41
NUP43-204ENST00000403890 SENP3Q9H4L4 574 aaPredicted RBP23.12■■□□□ 1.29
NUP43-204ENST00000403890 PHF23Q9BUL5 403 aaPredicted RBP22.68■■□□□ 1.22
NUP43-204ENST00000403890 ABCC9O60706 1549 aa22.24■■□□□ 1.15
NUP43-204ENST00000403890 CCDC180Q9P1Z9 1646 aa21.58■■□□□ 1.05
NUP43-204ENST00000403890 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
NUP43-204ENST00000403890 FOXD1Q16676 465 aa21.41■■□□□ 1.02
NUP43-204ENST00000403890 RB1CC1Q8TDY2 1594 aa20.89■□□□□ 0.93
NUP43-204ENST00000403890 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
NUP43-204ENST00000403890 NACADO15069 1562 aa20.61■□□□□ 0.89
NUP43-204ENST00000403890 DCAF8L2P0C7V8 631 aa20.5■□□□□ 0.87
NUP43-204ENST00000403890 UNC13AQ9UPW8 1703 aa20.31■□□□□ 0.84
NUP43-204ENST00000403890 MSH5O43196 834 aa20.31■□□□□ 0.84
NUP43-204ENST00000403890 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
NUP43-204ENST00000403890 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.84
NUP43-204ENST00000403890 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
NUP43-204ENST00000403890 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
NUP43-204ENST00000403890 CECR2Q9BXF3 1484 aa20.11■□□□□ 0.81
NUP43-204ENST00000403890 PIAS4Q8N2W9 510 aaPredicted RBP20.04■□□□□ 0.8
NUP43-204ENST00000403890 CC2D2AQ9P2K1 1620 aa20.02■□□□□ 0.8
NUP43-204ENST00000403890 POTEDQ86YR6 584 aa19.98■□□□□ 0.79
NUP43-204ENST00000403890 SHROOM4Q9ULL8 1493 aa19.97■□□□□ 0.79
NUP43-204ENST00000403890 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.77
NUP43-204ENST00000403890 PPP6R1Q9UPN7 881 aa19.79■□□□□ 0.76
NUP43-204ENST00000403890 ADRA2BP18089 450 aa19.75■□□□□ 0.75
NUP43-204ENST00000403890 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
NUP43-204ENST00000403890 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
NUP43-204ENST00000403890 ZCCHC6Q5VYS8 1495 aaKnown RBP19.61■□□□□ 0.73
NUP43-204ENST00000403890 CUX2O14529 1486 aa19.41■□□□□ 0.7
NUP43-204ENST00000403890 ERCC6Q03468 1493 aa19.25■□□□□ 0.67
NUP43-204ENST00000403890 NCAPD3P42695 1498 aa19.08■□□□□ 0.64
NUP43-204ENST00000403890 TRIM41Q8WV44 630 aa19■□□□□ 0.63
NUP43-204ENST00000403890 NESP48681 1621 aa18.92■□□□□ 0.62
NUP43-204ENST00000403890 ATAD2BQ9ULI0 1458 aa18.91■□□□□ 0.62
NUP43-204ENST00000403890 HMGXB3Q12766 1538 aa18.81■□□□□ 0.6
NUP43-204ENST00000403890 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
NUP43-204ENST00000403890 THOC2Q8NI27 1593 aaKnown RBP18.78■□□□□ 0.6
NUP43-204ENST00000403890 SMARCA4P51532 1647 aa18.69■□□□□ 0.58
NUP43-204ENST00000403890 BAZ1BQ9UIG0 1483 aaKnown RBP18.69■□□□□ 0.58
NUP43-204ENST00000403890 LAMC3Q9Y6N6 1575 aa18.68■□□□□ 0.58
NUP43-204ENST00000403890 PDS5BQ9NTI5 1447 aa18.66■□□□□ 0.58
NUP43-204ENST00000403890 KIF21AQ7Z4S6 1674 aa18.58■□□□□ 0.57
NUP43-204ENST00000403890 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
NUP43-204ENST00000403890 PEG3Q9GZU2 1588 aa18.52■□□□□ 0.56
NUP43-204ENST00000403890 OSCARQ8IYS5 282 aa18.52■□□□□ 0.56
NUP43-204ENST00000403890 MRC2Q9UBG0 1479 aa18.49■□□□□ 0.55
NUP43-204ENST00000403890 CADPSQ9ULU8 1353 aa18.48■□□□□ 0.55
NUP43-204ENST00000403890 WDR62O43379 1518 aa18.44■□□□□ 0.54
NUP43-204ENST00000403890 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
NUP43-204ENST00000403890 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
NUP43-204ENST00000403890 CEP164Q9UPV0 1460 aa18.3■□□□□ 0.52
NUP43-204ENST00000403890 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
NUP43-204ENST00000403890 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
NUP43-204ENST00000403890 RIMBP3CA6NJZ7 1639 aa18.2■□□□□ 0.5
NUP43-204ENST00000403890 RIMBP3BA6NNM3 1639 aa18.2■□□□□ 0.5
NUP43-204ENST00000403890 RIMBP3Q9UFD9 1639 aa18.2■□□□□ 0.5
NUP43-204ENST00000403890 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
NUP43-204ENST00000403890 CYB5RLQ6IPT4 315 aa18.12■□□□□ 0.49
NUP43-204ENST00000403890 CFTRP13569 1480 aa18.12■□□□□ 0.49
NUP43-204ENST00000403890 ARHGEF11O15085 1522 aa18.12■□□□□ 0.49
NUP43-204ENST00000403890 TRHP20396 242 aaPredicted RBP18.11■□□□□ 0.49
NUP43-204ENST00000403890 URB2Q14146 1524 aaKnown RBP18.11■□□□□ 0.49
NUP43-204ENST00000403890 WIZO95785 1651 aa18.09■□□□□ 0.49
NUP43-204ENST00000403890 ZNF608Q9ULD9 1512 aaPredicted RBP17.98■□□□□ 0.47
NUP43-204ENST00000403890 IFT140Q96RY7 1462 aa17.97■□□□□ 0.47
NUP43-204ENST00000403890 ARAP1Q96P48 1450 aa17.9■□□□□ 0.46
NUP43-204ENST00000403890 FBLN2P98095 1184 aa17.84■□□□□ 0.45
NUP43-204ENST00000403890 RSF1Q96T23 1441 aaPredicted RBP17.83■□□□□ 0.45
NUP43-204ENST00000403890 TOP2AP11388 1531 aaKnown RBP17.82■□□□□ 0.44
NUP43-204ENST00000403890 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
NUP43-204ENST00000403890 EIF4G3O43432 1585 aaKnown RBP17.8■□□□□ 0.44
NUP43-204ENST00000403890 AQRO60306 1485 aaKnown RBP eCLIP17.78■□□□□ 0.44
NUP43-204ENST00000403890 ABCC8Q09428 1581 aa17.77■□□□□ 0.44
NUP43-204ENST00000403890 CHD1O14646 1710 aa17.76■□□□□ 0.43
NUP43-204ENST00000403890 PRDM2Q13029 1718 aa17.75■□□□□ 0.43
NUP43-204ENST00000403890 PPP4R3CPQ6ZMV5 832 aa17.68■□□□□ 0.42
NUP43-204ENST00000403890 CCDC88BA6NC98 1476 aa17.68■□□□□ 0.42
NUP43-204ENST00000403890 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
NUP43-204ENST00000403890 TARBP1Q13395 1621 aaKnown RBP17.66■□□□□ 0.42
NUP43-204ENST00000403890 CHMP7Q8WUX9 453 aaPredicted RBP17.61■□□□□ 0.41
NUP43-204ENST00000403890 TDRD9Q8NDG6 1382 aaKnown RBP17.6■□□□□ 0.41
NUP43-204ENST00000403890 POLA1P09884 1462 aaPredicted RBP17.6■□□□□ 0.41
NUP43-204ENST00000403890 CLASP1Q7Z460 1538 aa17.58■□□□□ 0.41
NUP43-204ENST00000403890 SOGA1O94964 1423 aa17.56■□□□□ 0.4
NUP43-204ENST00000403890 RAD54L2Q9Y4B4 1467 aa17.56■□□□□ 0.4
NUP43-204ENST00000403890 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
NUP43-204ENST00000403890 SYNJ1O43426 1573 aa17.53■□□□□ 0.4
NUP43-204ENST00000403890 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
NUP43-204ENST00000403890 HOXD11P31277 338 aaPredicted RBP17.49■□□□□ 0.39
NUP43-204ENST00000403890 GAPVD1Q14C86 1478 aa17.49■□□□□ 0.39
NUP43-204ENST00000403890 MAGI1Q96QZ7 1491 aaPredicted RBP17.49■□□□□ 0.39
NUP43-204ENST00000403890 CACNB1Q02641 598 aaPredicted RBP17.48■□□□□ 0.39
NUP43-204ENST00000403890 CNKSR2Q8WXI2 1034 aa17.46■□□□□ 0.39
NUP43-204ENST00000403890 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
NUP43-204ENST00000403890 GRIN2BQ13224 1484 aa17.44■□□□□ 0.38
NUP43-204ENST00000403890 WDR97A6NE52 1622 aa17.44■□□□□ 0.38
NUP43-204ENST00000403890 FGD5Q6ZNL6 1462 aa17.4■□□□□ 0.38
NUP43-204ENST00000403890 RNF216Q9NWF9 866 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms