RNA–Protein interactions for RNA: ENST00000569882.1

CNOT1-219, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-219ENST00000569882 AEBP2Q6ZN18 517 aaPredicted RBP17.97■□□□□ 0.47
CNOT1-219ENST00000569882 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
CNOT1-219ENST00000569882 SENP3Q9H4L4 574 aaPredicted RBP15.6■□□□□ 0.09
CNOT1-219ENST00000569882 PHF23Q9BUL5 403 aaPredicted RBP15.23■□□□□ 0.03
CNOT1-219ENST00000569882 POTEDQ86YR6 584 aa14.82□□□□□ -0.04
CNOT1-219ENST00000569882 FOXD1Q16676 465 aa14.53□□□□□ -0.08
CNOT1-219ENST00000569882 MSH5O43196 834 aa13.99□□□□□ -0.17
CNOT1-219ENST00000569882 PIAS4Q8N2W9 510 aaPredicted RBP13.5□□□□□ -0.25
CNOT1-219ENST00000569882 PLPPR3Q6T4P5 718 aa13.13□□□□□ -0.31
CNOT1-219ENST00000569882 PPP6R1Q9UPN7 881 aa12.97□□□□□ -0.33
CNOT1-219ENST00000569882 ADRA2BP18089 450 aa12.96□□□□□ -0.33
CNOT1-219ENST00000569882 CACNB1Q02641 598 aaPredicted RBP12.5□□□□□ -0.41
CNOT1-219ENST00000569882 DMRT2Q9Y5R5 561 aa12.19□□□□□ -0.46
CNOT1-219ENST00000569882 MAPK8IP2Q13387 824 aaPredicted RBP12.1□□□□□ -0.47
CNOT1-219ENST00000569882 SCAF1Q9H7N4 1312 aaKnown RBP12□□□□□ -0.49
CNOT1-219ENST00000569882 DCAF8L1A6NGE4 600 aa11.91□□□□□ -0.5
CNOT1-219ENST00000569882 RNF39Q9H2S5 420 aa11.79□□□□□ -0.52
CNOT1-219ENST00000569882 C1QBPQ07021 282 aaKnown RBP11.63□□□□□ -0.55
CNOT1-219ENST00000569882 PPP4R3CPQ6ZMV5 832 aa11.55□□□□□ -0.56
CNOT1-219ENST00000569882 POTEHQ6S545 545 aa11.51□□□□□ -0.57
CNOT1-219ENST00000569882 NISCHQ9Y2I1 1504 aa11.48□□□□□ -0.57
CNOT1-219ENST00000569882 HOXD11P31277 338 aaPredicted RBP11.42□□□□□ -0.58
CNOT1-219ENST00000569882 CNKSR2Q8WXI2 1034 aa11.27□□□□□ -0.61
CNOT1-219ENST00000569882 RNF216Q9NWF9 866 aaPredicted RBP11.19□□□□□ -0.62
CNOT1-219ENST00000569882 DNAJC5BQ9UF47 199 aa11.17□□□□□ -0.62
CNOT1-219ENST00000569882 NCBP3Q53F19 620 aaKnown RBP11.1□□□□□ -0.63
CNOT1-219ENST00000569882 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.04□□□□□ -0.649e-7■□□□□ 9.1
CNOT1-219ENST00000569882 NPM3O75607 178 aaKnown RBP11.02□□□□□ -0.65
CNOT1-219ENST00000569882 KCNA4P22459 653 aa10.98□□□□□ -0.65
CNOT1-219ENST00000569882 CAPN15O75808 1086 aa10.81□□□□□ -0.68
CNOT1-219ENST00000569882 DSG3P32926 999 aa10.79□□□□□ -0.68
CNOT1-219ENST00000569882 SPINK5Q9NQ38 1064 aaPredicted RBP10.67□□□□□ -0.7
CNOT1-219ENST00000569882 U3KPZ7 1027 aaPredicted RBP10.6□□□□□ -0.71
CNOT1-219ENST00000569882 SLC4A2P04920 1241 aa10.5□□□□□ -0.73
CNOT1-219ENST00000569882 ABCB7O75027 752 aa10.45□□□□□ -0.74
CNOT1-219ENST00000569882 TRHP20396 242 aaPredicted RBP10.45□□□□□ -0.74
CNOT1-219ENST00000569882 CHRDL2Q6WN34 429 aa10.45□□□□□ -0.74
CNOT1-219ENST00000569882 SP7Q8TDD2 431 aaPredicted RBP10.45□□□□□ -0.74
CNOT1-219ENST00000569882 RBM42Q9BTD8 480 aaKnown RBP10.44□□□□□ -0.74
CNOT1-219ENST00000569882 APLP2Q06481 763 aa10.41□□□□□ -0.74
CNOT1-219ENST00000569882 ZNF219Q9P2Y4 722 aaPredicted RBP10.39□□□□□ -0.75
CNOT1-219ENST00000569882 SLC4A1APQ9BWU0 796 aaKnown RBP10.36□□□□□ -0.75
CNOT1-219ENST00000569882 CCDC180Q9P1Z9 1646 aa10.27□□□□□ -0.77
CNOT1-219ENST00000569882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.17□□□□□ -0.78
CNOT1-219ENST00000569882 HNRNPUL2Q1KMD3 747 aaKnown RBP10.17□□□□□ -0.78
CNOT1-219ENST00000569882 HAX1O00165 279 aa10.13□□□□□ -0.79
CNOT1-219ENST00000569882 ZBTB22O15209 634 aa10.13□□□□□ -0.79
CNOT1-219ENST00000569882 MYCNP04198 464 aaPredicted RBP10.13□□□□□ -0.79
CNOT1-219ENST00000569882 FOXD4L1Q9NU39 408 aa10.13□□□□□ -0.79
CNOT1-219ENST00000569882 SAMD1Q6SPF0 538 aaPredicted RBP10.12□□□□□ -0.79
CNOT1-219ENST00000569882 ABCC9O60706 1549 aa10.12□□□□□ -0.79
CNOT1-219ENST00000569882 PIP4P2Q8N4L2 257 aa10.01□□□□□ -0.81
CNOT1-219ENST00000569882 ATF5Q9Y2D1 282 aaPredicted RBP10□□□□□ -0.81
CNOT1-219ENST00000569882 AKT1S1Q96B36 256 aa9.99□□□□□ -0.81
CNOT1-219ENST00000569882 POLA2Q14181 598 aa9.94□□□□□ -0.82
CNOT1-219ENST00000569882 PLSCR2Q9NRY7 297 aa9.91□□□□□ -0.82
CNOT1-219ENST00000569882 REM2Q8IYK8 340 aaPredicted RBP9.87□□□□□ -0.83
CNOT1-219ENST00000569882 LHX8Q68G74 356 aa9.81□□□□□ -0.84
CNOT1-219ENST00000569882 FXR2P51116 673 aaKnown RBP eCLIP9.79□□□□□ -0.842e-8■■■□□ 18.3
CNOT1-219ENST00000569882 DCAF8L2P0C7V8 631 aa9.78□□□□□ -0.84
CNOT1-219ENST00000569882 ATXN8OSP0DMR3 200 aa9.78□□□□□ -0.84
CNOT1-219ENST00000569882 CSRNP3Q8WYN3 585 aa9.78□□□□□ -0.84
CNOT1-219ENST00000569882 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
CNOT1-219ENST00000569882 EHMT2Q96KQ7 1210 aa9.77□□□□□ -0.85
CNOT1-219ENST00000569882 EVX2Q03828 476 aa9.76□□□□□ -0.85
CNOT1-219ENST00000569882 ZBTB12Q9Y330 459 aaPredicted RBP9.76□□□□□ -0.85
CNOT1-219ENST00000569882 RB1CC1Q8TDY2 1594 aa9.71□□□□□ -0.85
CNOT1-219ENST00000569882 NACADO15069 1562 aa9.66□□□□□ -0.86
CNOT1-219ENST00000569882 OSCARQ8IYS5 282 aa9.65□□□□□ -0.86
CNOT1-219ENST00000569882 GABBR2O75899 941 aa9.59□□□□□ -0.87
CNOT1-219ENST00000569882 PRKAR2AP13861 404 aaKnown RBP9.56□□□□□ -0.88
CNOT1-219ENST00000569882 ZCCHC6Q5VYS8 1495 aaKnown RBP9.54□□□□□ -0.88
CNOT1-219ENST00000569882 C19orf67A6NJJ6 358 aa9.52□□□□□ -0.89
CNOT1-219ENST00000569882 MKRN4PQ13434 485 aaPredicted RBP9.52□□□□□ -0.89
CNOT1-219ENST00000569882 MYO15BQ96JP2 1530 aa9.51□□□□□ -0.89
CNOT1-219ENST00000569882 FBLN2P98095 1184 aa9.48□□□□□ -0.89
CNOT1-219ENST00000569882 UNC13AQ9UPW8 1703 aa9.47□□□□□ -0.89
CNOT1-219ENST00000569882 DCAF1Q9Y4B6 1507 aa9.46□□□□□ -0.89
CNOT1-219ENST00000569882 CLEC11AQ9Y240 323 aa9.45□□□□□ -0.9
CNOT1-219ENST00000569882 PABPN1Q86U42 306 aaKnown RBP eCLIP9.44□□□□□ -0.9
CNOT1-219ENST00000569882 SCRIBQ14160 1630 aa9.41□□□□□ -0.9
CNOT1-219ENST00000569882 SPDYE1Q8NFV5 336 aaPredicted RBP9.4□□□□□ -0.9
CNOT1-219ENST00000569882 SPDYE2BA6NHP3 402 aa9.36□□□□□ -0.91
CNOT1-219ENST00000569882 SPDYE6P0CI01 402 aa9.36□□□□□ -0.91
CNOT1-219ENST00000569882 SPDYE2Q495Y8 402 aa9.36□□□□□ -0.91
CNOT1-219ENST00000569882 ZNF692Q9BU19 519 aaPredicted RBP9.32□□□□□ -0.92
CNOT1-219ENST00000569882 BICRAQ9NZM4 1560 aa9.31□□□□□ -0.92
CNOT1-219ENST00000569882 POTEIP0CG38 1075 aa9.3□□□□□ -0.92
CNOT1-219ENST00000569882 DCBLD2Q96PD2 775 aa9.29□□□□□ -0.92
CNOT1-219ENST00000569882 POTEMA6NI47 508 aa9.28□□□□□ -0.92
CNOT1-219ENST00000569882 SSUH2Q9Y2M2 353 aa9.28□□□□□ -0.92
CNOT1-219ENST00000569882 CHADLQ6NUI6 762 aa9.27□□□□□ -0.93
CNOT1-219ENST00000569882 SHROOM4Q9ULL8 1493 aa9.27□□□□□ -0.93
CNOT1-219ENST00000569882 CLCN6P51797 869 aa9.24□□□□□ -0.93
CNOT1-219ENST00000569882 POTEGQ6S5H5 508 aa9.23□□□□□ -0.93
CNOT1-219ENST00000569882 CD44P16070 742 aaKnown RBP9.22□□□□□ -0.93
CNOT1-219ENST00000569882 PCDH10Q9P2E7 1040 aa9.19□□□□□ -0.94
CNOT1-219ENST00000569882 PRR29P0C7W0 189 aa9.16□□□□□ -0.94
CNOT1-219ENST00000569882 EIF4G1Q04637 1599 aaKnown RBP9.14□□□□□ -0.95
CNOT1-219ENST00000569882 OTUD5Q96G74 571 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms