Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXN3O00409 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.67■□□□□ 0.26
FOXN3O00409 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXN3O00409 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
FOXN3O00409 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXN3O00409 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXN3O00409 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXN3O00409 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXN3O00409 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.66■□□□□ 0.26
FOXN3O00409 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXN3O00409 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.66■□□□□ 0.26
FOXN3O00409 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 AL390955.2-201ENST00000603032 514 ntBASIC16.66■□□□□ 0.26
FOXN3O00409 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 AC093512.1-201ENST00000617969 520 ntBASIC16.66■□□□□ 0.26
FOXN3O00409 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 ZBED1P1-201ENST00000502364 1930 ntBASIC16.66■□□□□ 0.26
FOXN3O00409 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXN3O00409 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXN3O00409 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
FOXN3O00409 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
FOXN3O00409 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 KRT18P43-201ENST00000469825 1281 ntBASIC16.65■□□□□ 0.26
FOXN3O00409 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 AC092337.1-201ENST00000568699 1129 ntBASIC16.65■□□□□ 0.26
FOXN3O00409 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
FOXN3O00409 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXN3O00409 AL390754.1-201ENST00000619088 582 ntBASIC16.65■□□□□ 0.26
FOXN3O00409 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXN3O00409 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXN3O00409 NORAD-201ENST00000565493 5339 ntBASIC16.65■□□□□ 0.26
FOXN3O00409 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
FOXN3O00409 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.26
FOXN3O00409 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
FOXN3O00409 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.64■□□□□ 0.26
FOXN3O00409 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
FOXN3O00409 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXN3O00409 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms