RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
SHANK1-204ENST00000391814 PELP1Q8IZL8 1130 aaKnown RBP26.17■■□□□ 1.78
SHANK1-204ENST00000391814 SUPT5HO00267 1087 aaKnown RBP26.03■■□□□ 1.76
SHANK1-204ENST00000391814 EHMT2Q96KQ7 1210 aa25.63■■□□□ 1.69
SHANK1-204ENST00000391814 MYT1Q01538 1121 aa25.41■■□□□ 1.66
SHANK1-204ENST00000391814 ERICH6Q7L0X2 663 aa25.39■■□□□ 1.65
SHANK1-204ENST00000391814 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
SHANK1-204ENST00000391814 PCGF6Q9BYE7 350 aa25.32■■□□□ 1.64
SHANK1-204ENST00000391814 CENPBP07199 599 aaPredicted RBP25.21■■□□□ 1.63
SHANK1-204ENST00000391814 CCER1Q8TC90 406 aaPredicted RBP24.94■■□□□ 1.58
SHANK1-204ENST00000391814 TTBK1Q5TCY1 1321 aaPredicted RBP24.92■■□□□ 1.58
SHANK1-204ENST00000391814 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
SHANK1-204ENST00000391814 YTHDC1Q96MU7 727 aaKnown RBP24.78■■□□□ 1.56
SHANK1-204ENST00000391814 APLP2Q06481 763 aa24.75■■□□□ 1.55
SHANK1-204ENST00000391814 FAM9AQ8IZU1 332 aaPredicted RBP24.66■■□□□ 1.54
SHANK1-204ENST00000391814 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
SHANK1-204ENST00000391814 NEFLP07196 543 aa24.46■■□□□ 1.51
SHANK1-204ENST00000391814 HRCP23327 699 aa24.24■■□□□ 1.47
SHANK1-204ENST00000391814 RANGAP1P46060 587 aaPredicted RBP24.13■■□□□ 1.45
SHANK1-204ENST00000391814 PPARGC1BQ86YN6 1023 aaKnown RBP23.97■■□□□ 1.43
SHANK1-204ENST00000391814 TRIM26Q12899 539 aaPredicted RBP23.93■■□□□ 1.42
SHANK1-204ENST00000391814 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
SHANK1-204ENST00000391814 DAXXQ9UER7 740 aaPredicted RBP23.86■■□□□ 1.41
SHANK1-204ENST00000391814 ATP1B4Q9UN42 357 aaPredicted RBP23.77■■□□□ 1.4
SHANK1-204ENST00000391814 UBTFP17480 764 aaKnown RBP23.66■■□□□ 1.38
SHANK1-204ENST00000391814 RTL5Q5HYW3 569 aaPredicted RBP23.62■■□□□ 1.37
SHANK1-204ENST00000391814 GTF3C3Q9Y5Q9 886 aa23.53■■□□□ 1.36
SHANK1-204ENST00000391814 DIEXFQ68CQ4 756 aaKnown RBP23.5■■□□□ 1.35
SHANK1-204ENST00000391814 ZNF316A6NFI3 1004 aaPredicted RBP23.4■■□□□ 1.34
SHANK1-204ENST00000391814 BCANQ96GW7 911 aa23.36■■□□□ 1.33
SHANK1-204ENST00000391814 LOC105371045A0A1W2PR82 267 aa23.35■■□□□ 1.33
SHANK1-204ENST00000391814 POLR3GLQ9BT43 218 aa23.35■■□□□ 1.33
SHANK1-204ENST00000391814 CNGB1Q14028 1251 aaPredicted RBP23.31■■□□□ 1.32
SHANK1-204ENST00000391814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.28■■□□□ 1.32
SHANK1-204ENST00000391814 ITGAEP38570 1179 aa23.25■■□□□ 1.31
SHANK1-204ENST00000391814 HNRNPUL2Q1KMD3 747 aaKnown RBP23.23■■□□□ 1.31
SHANK1-204ENST00000391814 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
SHANK1-204ENST00000391814 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
SHANK1-204ENST00000391814 CDK11AQ9UQ88 783 aaPredicted RBP23.04■■□□□ 1.28
SHANK1-204ENST00000391814 CHIC1Q5VXU3 224 aa23.02■■□□□ 1.28
SHANK1-204ENST00000391814 MYT1LQ9UL68 1186 aa22.92■■□□□ 1.26
SHANK1-204ENST00000391814 EIF5BO60841 1220 aaKnown RBP22.9■■□□□ 1.26
SHANK1-204ENST00000391814 SLC4A1APQ9BWU0 796 aaKnown RBP22.83■■□□□ 1.25
SHANK1-204ENST00000391814 ANP32AP39687 249 aaKnown RBP22.67■■□□□ 1.22
SHANK1-204ENST00000391814 ANP32CO43423 234 aa22.67■■□□□ 1.22
SHANK1-204ENST00000391814 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
SHANK1-204ENST00000391814 NPM2Q86SE8 214 aaKnown RBP22.64■■□□□ 1.22
SHANK1-204ENST00000391814 SCAF1Q9H7N4 1312 aaKnown RBP22.6■■□□□ 1.21
SHANK1-204ENST00000391814 BCL11AQ9H165 835 aa22.57■■□□□ 1.2
SHANK1-204ENST00000391814 GLIPR1L2Q4G1C9 344 aa22.56■■□□□ 1.2
SHANK1-204ENST00000391814 FKBP8Q14318 412 aa22.52■■□□□ 1.2
SHANK1-204ENST00000391814 NBR1Q14596 966 aa22.5■■□□□ 1.19
SHANK1-204ENST00000391814 FAM50AQ14320 339 aaKnown RBP22.49■■□□□ 1.19
SHANK1-204ENST00000391814 TRIM52Q96A61 297 aa22.37■■□□□ 1.17
SHANK1-204ENST00000391814 CANXP27824 592 aaKnown RBP22.32■■□□□ 1.16
SHANK1-204ENST00000391814 ZBTB47Q9UFB7 747 aaPredicted RBP22.27■■□□□ 1.16
SHANK1-204ENST00000391814 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
SHANK1-204ENST00000391814 ANP32BQ92688 251 aaKnown RBP22.24■■□□□ 1.15
SHANK1-204ENST00000391814 SLC24A1O60721 1099 aa22.22■■□□□ 1.15
SHANK1-204ENST00000391814 ARXQ96QS3 562 aa22.2■■□□□ 1.14
SHANK1-204ENST00000391814 ANP32EQ9BTT0 268 aa22.15■■□□□ 1.14
SHANK1-204ENST00000391814 HNRNPUQ00839 825 aaKnown RBP eCLIP22.04■■□□□ 1.12
SHANK1-204ENST00000391814 HSP90AA1P07900 732 aaKnown RBP22.02■■□□□ 1.12
SHANK1-204ENST00000391814 IRX6P78412 446 aaPredicted RBP21.99■■□□□ 1.11
SHANK1-204ENST00000391814 FAM9BQ8IZU0 186 aa21.95■■□□□ 1.1
SHANK1-204ENST00000391814 RTN4Q9NQC3 1192 aaKnown RBP21.94■■□□□ 1.1
SHANK1-204ENST00000391814 MIER1Q8N108 512 aa21.93■■□□□ 1.1
SHANK1-204ENST00000391814 CCDC136Q96JN2 1154 aa21.93■■□□□ 1.1
SHANK1-204ENST00000391814 UPF2Q9HAU5 1272 aaKnown RBP21.92■■□□□ 1.1
SHANK1-204ENST00000391814 DDX10Q13206 875 aaKnown RBP21.91■■□□□ 1.1
SHANK1-204ENST00000391814 DCAF1Q9Y4B6 1507 aa21.89■■□□□ 1.1
SHANK1-204ENST00000391814 SALL2Q9Y467 1007 aaPredicted RBP21.82■■□□□ 1.08
SHANK1-204ENST00000391814 NEFMP07197 916 aa21.7■■□□□ 1.06
SHANK1-204ENST00000391814 TRIM44Q96DX7 344 aaPredicted RBP21.7■■□□□ 1.06
SHANK1-204ENST00000391814 NAP1L5Q96NT1 182 aaPredicted RBP21.69■■□□□ 1.06
SHANK1-204ENST00000391814 DDRGK1Q96HY6 314 aa21.69■■□□□ 1.06
SHANK1-204ENST00000391814 TONSLQ96HA7 1378 aa21.67■■□□□ 1.06
SHANK1-204ENST00000391814 PLPPR3Q6T4P5 718 aa21.66■■□□□ 1.06
SHANK1-204ENST00000391814 TNNT2P45379 298 aaPredicted RBP21.64■■□□□ 1.06
SHANK1-204ENST00000391814 LAS1LQ9Y4W2 734 aaKnown RBP21.6■■□□□ 1.05
SHANK1-204ENST00000391814 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.04
SHANK1-204ENST00000391814 P3H3Q8IVL6 736 aa21.56■■□□□ 1.04
SHANK1-204ENST00000391814 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 MRS2Q9HD23 443 aa21.55■■□□□ 1.04
SHANK1-204ENST00000391814 DEKP35659 375 aaKnown RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 FBLN2P98095 1184 aa21.55■■□□□ 1.04
SHANK1-204ENST00000391814 NOP58Q9Y2X3 529 aaKnown RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 TMC1Q8TDI8 760 aa21.54■■□□□ 1.04
SHANK1-204ENST00000391814 HIRIP3Q9BW71 556 aaPredicted RBP21.53■■□□□ 1.04
SHANK1-204ENST00000391814 BECN1Q14457 450 aa21.53■■□□□ 1.04
SHANK1-204ENST00000391814 SUPT16HQ9Y5B9 1047 aaKnown RBP21.53■■□□□ 1.04
SHANK1-204ENST00000391814 ARID3CA6NKF2 412 aa21.51■■□□□ 1.03
SHANK1-204ENST00000391814 ERICH6BQ5W0A0 696 aa21.51■■□□□ 1.03
SHANK1-204ENST00000391814 PPM1GO15355 546 aaPredicted RBP21.46■■□□□ 1.03
SHANK1-204ENST00000391814 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
SHANK1-204ENST00000391814 NCLP19338 710 aaKnown RBP21.45■■□□□ 1.02
SHANK1-204ENST00000391814 DNTTIP2Q5QJE6 756 aaKnown RBP21.43■■□□□ 1.02
SHANK1-204ENST00000391814 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.43■■□□□ 1.02
SHANK1-204ENST00000391814 PTMAP06454 111 aaKnown RBP21.41■■□□□ 1.02
SHANK1-204ENST00000391814 AMER1Q5JTC6 1135 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms