RNA–Protein interactions for RNA: ENST00000420567.7

VAT1-202, Transcript of vesicle amine transport 1, humanhuman

TSL 2 BASIC

Gene VAT1, Length 1,069 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-202ENST00000420567 NISCHQ9Y2I1 1504 aa38.58■■■■□ 3.77
VAT1-202ENST00000420567 CCDC180Q9P1Z9 1646 aa34.26■■■■□ 3.07
VAT1-202ENST00000420567 ABCC9O60706 1549 aa33.66■■■□□ 2.98
VAT1-202ENST00000420567 DCAF8L2P0C7V8 631 aa32.3■■■□□ 2.76
VAT1-202ENST00000420567 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
VAT1-202ENST00000420567 NACADO15069 1562 aa32.23■■■□□ 2.75
VAT1-202ENST00000420567 ZCCHC6Q5VYS8 1495 aaKnown RBP32.15■■■□□ 2.74
VAT1-202ENST00000420567 MYO15BQ96JP2 1530 aa32■■■□□ 2.71
VAT1-202ENST00000420567 DCAF1Q9Y4B6 1507 aa31.87■■■□□ 2.69
VAT1-202ENST00000420567 UNC13AQ9UPW8 1703 aa31.5■■■□□ 2.63
VAT1-202ENST00000420567 PABPN1Q86U42 306 aaKnown RBP eCLIP31.46■■■□□ 2.63
VAT1-202ENST00000420567 SCRIBQ14160 1630 aa31.36■■■□□ 2.61
VAT1-202ENST00000420567 BICRAQ9NZM4 1560 aa31.33■■■□□ 2.61
VAT1-202ENST00000420567 SHROOM4Q9ULL8 1493 aa30.95■■■□□ 2.54
VAT1-202ENST00000420567 DNAJC5BQ9UF47 199 aa30.9■■■□□ 2.54
VAT1-202ENST00000420567 EIF4G1Q04637 1599 aaKnown RBP30.51■■■□□ 2.47
VAT1-202ENST00000420567 CC2D2AQ9P2K1 1620 aa30.4■■■□□ 2.46
VAT1-202ENST00000420567 CECR2Q9BXF3 1484 aa30.22■■■□□ 2.43
VAT1-202ENST00000420567 SMARCA4P51532 1647 aa29.94■■■□□ 2.38
VAT1-202ENST00000420567 BAZ1AQ9NRL2 1556 aaPredicted RBP29.9■■■□□ 2.38
VAT1-202ENST00000420567 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
VAT1-202ENST00000420567 MROH2BQ7Z745 1585 aa29.76■■■□□ 2.35
VAT1-202ENST00000420567 NCAPD3P42695 1498 aa29.75■■■□□ 2.35
VAT1-202ENST00000420567 SMARCA2P51531 1590 aa29.73■■■□□ 2.35
VAT1-202ENST00000420567 PEG3Q9GZU2 1588 aa29.61■■■□□ 2.33
VAT1-202ENST00000420567 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
VAT1-202ENST00000420567 BAZ1BQ9UIG0 1483 aaKnown RBP29.56■■■□□ 2.32
VAT1-202ENST00000420567 WIZO95785 1651 aa29.42■■■□□ 2.3
VAT1-202ENST00000420567 RSF1Q96T23 1441 aaPredicted RBP29.4■■■□□ 2.3
VAT1-202ENST00000420567 TOP2AP11388 1531 aaKnown RBP29.12■■■□□ 2.25
VAT1-202ENST00000420567 NESP48681 1621 aa29.12■■■□□ 2.25
VAT1-202ENST00000420567 ERCC6Q03468 1493 aa28.99■■■□□ 2.23
VAT1-202ENST00000420567 LAMC3Q9Y6N6 1575 aa28.96■■■□□ 2.23
VAT1-202ENST00000420567 CADPSQ9ULU8 1353 aa28.9■■■□□ 2.22
VAT1-202ENST00000420567 PDS5BQ9NTI5 1447 aa28.78■■■□□ 2.2
VAT1-202ENST00000420567 CCDC88BA6NC98 1476 aa28.78■■■□□ 2.2
VAT1-202ENST00000420567 CFTRP13569 1480 aa28.72■■■□□ 2.19
VAT1-202ENST00000420567 KIF21AQ7Z4S6 1674 aa28.7■■■□□ 2.19
VAT1-202ENST00000420567 SUPT5HO00267 1087 aaKnown RBP28.69■■■□□ 2.18
VAT1-202ENST00000420567 THOC2Q8NI27 1593 aaKnown RBP28.65■■■□□ 2.18
VAT1-202ENST00000420567 CUX2O14529 1486 aa28.65■■■□□ 2.18
VAT1-202ENST00000420567 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
VAT1-202ENST00000420567 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
VAT1-202ENST00000420567 MRC2Q9UBG0 1479 aa28.53■■■□□ 2.16
VAT1-202ENST00000420567 WDR62O43379 1518 aa28.42■■■□□ 2.14
VAT1-202ENST00000420567 PRDM2Q13029 1718 aa28.41■■■□□ 2.14
VAT1-202ENST00000420567 URB2Q14146 1524 aaKnown RBP28.32■■■□□ 2.12
VAT1-202ENST00000420567 TOPBP1Q92547 1522 aa28.13■■■□□ 2.09
VAT1-202ENST00000420567 DNMBPQ6XZF7 1577 aa28.08■■■□□ 2.09
VAT1-202ENST00000420567 ABCC8Q09428 1581 aa28.06■■■□□ 2.08
VAT1-202ENST00000420567 IFT140Q96RY7 1462 aa27.95■■■□□ 2.07
VAT1-202ENST00000420567 CUX1P39880 1505 aa27.91■■■□□ 2.06
VAT1-202ENST00000420567 POLA1P09884 1462 aaPredicted RBP27.89■■■□□ 2.06
VAT1-202ENST00000420567 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
VAT1-202ENST00000420567 FGD5Q6ZNL6 1462 aa27.84■■■□□ 2.05
VAT1-202ENST00000420567 RAD54L2Q9Y4B4 1467 aa27.8■■■□□ 2.04
VAT1-202ENST00000420567 TARBP1Q13395 1621 aaKnown RBP27.8■■■□□ 2.04
VAT1-202ENST00000420567 DNAJC5Q9H3Z4 198 aa27.79■■■□□ 2.04
VAT1-202ENST00000420567 SOGA1O94964 1423 aa27.77■■■□□ 2.04
VAT1-202ENST00000420567 EIF4G3O43432 1585 aaKnown RBP27.73■■■□□ 2.03
VAT1-202ENST00000420567 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.031e-7■□□□□ 10.9
VAT1-202ENST00000420567 AQRO60306 1485 aaKnown RBP eCLIP27.7■■■□□ 2.021e-10■■■■■ 30.5
VAT1-202ENST00000420567 SYNJ1O43426 1573 aa27.68■■■□□ 2.02
VAT1-202ENST00000420567 TDRD9Q8NDG6 1382 aaKnown RBP27.64■■■□□ 2.02
VAT1-202ENST00000420567 TOP2BQ02880 1626 aa27.63■■■□□ 2.01
VAT1-202ENST00000420567 BIVM-ERCC5R4GMW8 1640 aa27.63■■■□□ 2.01
VAT1-202ENST00000420567 WDR97A6NE52 1622 aa27.56■■■□□ 2
VAT1-202ENST00000420567 ABCA10Q8WWZ4 1543 aa27.53■■■□□ 2
VAT1-202ENST00000420567 SNAPC4Q5SXM2 1469 aa27.45■■□□□ 1.99
VAT1-202ENST00000420567 OSCARQ8IYS5 282 aa27.45■■□□□ 1.98
VAT1-202ENST00000420567 GRIN2BQ13224 1484 aa27.44■■□□□ 1.98
VAT1-202ENST00000420567 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
VAT1-202ENST00000420567 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
VAT1-202ENST00000420567 FBLN2P98095 1184 aa27.38■■□□□ 1.97
VAT1-202ENST00000420567 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
VAT1-202ENST00000420567 MAGI1Q96QZ7 1491 aaPredicted RBP27.36■■□□□ 1.97
VAT1-202ENST00000420567 CHD1O14646 1710 aa27.35■■□□□ 1.97
VAT1-202ENST00000420567 SYNJ2O15056 1496 aa27.27■■□□□ 1.96
VAT1-202ENST00000420567 CHMP7Q8WUX9 453 aaPredicted RBP27.27■■□□□ 1.96
VAT1-202ENST00000420567 ADAMTS12P58397 1594 aa27.19■■□□□ 1.94
VAT1-202ENST00000420567 ERICH3Q5RHP9 1530 aa27.19■■□□□ 1.94
VAT1-202ENST00000420567 KIF27Q86VH2 1401 aa27.14■■□□□ 1.93
VAT1-202ENST00000420567 FHAD1B1AJZ9 1412 aa27.13■■□□□ 1.93
VAT1-202ENST00000420567 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
VAT1-202ENST00000420567 CLASP1Q7Z460 1538 aa27.08■■□□□ 1.93
VAT1-202ENST00000420567 TRIM41Q8WV44 630 aa27.05■■□□□ 1.92
VAT1-202ENST00000420567 ARHGEF11O15085 1522 aa27.05■■□□□ 1.92
VAT1-202ENST00000420567 RIMBP3CA6NJZ7 1639 aa27.04■■□□□ 1.92
VAT1-202ENST00000420567 RIMBP3BA6NNM3 1639 aa27.04■■□□□ 1.92
VAT1-202ENST00000420567 RIMBP3Q9UFD9 1639 aa27.04■■□□□ 1.92
VAT1-202ENST00000420567 IGF1RP08069 1367 aa27.02■■□□□ 1.92
VAT1-202ENST00000420567 CEP170Q5SW79 1584 aa26.98■■□□□ 1.91
VAT1-202ENST00000420567 NUP160Q12769 1436 aa26.97■■□□□ 1.91
VAT1-202ENST00000420567 CUL7Q14999 1698 aa26.93■■□□□ 1.9
VAT1-202ENST00000420567 RUSC2Q8N2Y8 1516 aa26.93■■□□□ 1.9
VAT1-202ENST00000420567 CARMIL1Q5VZK9 1371 aa26.86■■□□□ 1.89
VAT1-202ENST00000420567 ARAP1Q96P48 1450 aa26.85■■□□□ 1.89
VAT1-202ENST00000420567 CYB5RLQ6IPT4 315 aa26.8■■□□□ 1.88
VAT1-202ENST00000420567 SHROOM2Q13796 1616 aa26.75■■□□□ 1.87
VAT1-202ENST00000420567 ERCC6L2Q5T890 1561 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms