RNA–Protein interactions for RNA: ENST00000617222.4

PCDHGC3-204, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3 BASIC

Gene PCDHGC3, Length 731 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-204ENST00000617222 NISCHQ9Y2I1 1504 aa36.94■■■■□ 3.5
PCDHGC3-204ENST00000617222 CCDC180Q9P1Z9 1646 aa32.51■■■□□ 2.79
PCDHGC3-204ENST00000617222 ABCC9O60706 1549 aa31.56■■■□□ 2.64
PCDHGC3-204ENST00000617222 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
PCDHGC3-204ENST00000617222 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
PCDHGC3-204ENST00000617222 NACADO15069 1562 aa30.54■■■□□ 2.48
PCDHGC3-204ENST00000617222 DCAF1Q9Y4B6 1507 aa30.52■■■□□ 2.48
PCDHGC3-204ENST00000617222 MYO15BQ96JP2 1530 aa30.47■■■□□ 2.47
PCDHGC3-204ENST00000617222 RB1CC1Q8TDY2 1594 aa30.46■■■□□ 2.47
PCDHGC3-204ENST00000617222 SCRIBQ14160 1630 aa29.81■■■□□ 2.36
PCDHGC3-204ENST00000617222 UNC13AQ9UPW8 1703 aa29.68■■■□□ 2.34
PCDHGC3-204ENST00000617222 PABPN1Q86U42 306 aaKnown RBP eCLIP29.67■■■□□ 2.34
PCDHGC3-204ENST00000617222 SHROOM4Q9ULL8 1493 aa29.6■■■□□ 2.33
PCDHGC3-204ENST00000617222 BICRAQ9NZM4 1560 aa29.53■■■□□ 2.32
PCDHGC3-204ENST00000617222 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
PCDHGC3-204ENST00000617222 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
PCDHGC3-204ENST00000617222 DNAJC5BQ9UF47 199 aa28.64■■■□□ 2.18
PCDHGC3-204ENST00000617222 BAZ1AQ9NRL2 1556 aaPredicted RBP28.56■■■□□ 2.16
PCDHGC3-204ENST00000617222 SMARCA4P51532 1647 aa28.52■■■□□ 2.16
PCDHGC3-204ENST00000617222 CC2D2AQ9P2K1 1620 aa28.5■■■□□ 2.15
PCDHGC3-204ENST00000617222 MROH2BQ7Z745 1585 aa28.5■■■□□ 2.15
PCDHGC3-204ENST00000617222 RSF1Q96T23 1441 aaPredicted RBP28.36■■■□□ 2.13
PCDHGC3-204ENST00000617222 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
PCDHGC3-204ENST00000617222 SMARCA2P51531 1590 aa28.26■■■□□ 2.11
PCDHGC3-204ENST00000617222 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
PCDHGC3-204ENST00000617222 PEG3Q9GZU2 1588 aa28.2■■■□□ 2.11
PCDHGC3-204ENST00000617222 WIZO95785 1651 aa28.17■■■□□ 2.1
PCDHGC3-204ENST00000617222 SUPT5HO00267 1087 aaKnown RBP28.12■■■□□ 2.09
PCDHGC3-204ENST00000617222 BAZ1BQ9UIG0 1483 aaKnown RBP28.1■■■□□ 2.09
PCDHGC3-204ENST00000617222 HMGXB3Q12766 1538 aa28.06■■■□□ 2.08
PCDHGC3-204ENST00000617222 TOP2AP11388 1531 aaKnown RBP27.89■■■□□ 2.06
PCDHGC3-204ENST00000617222 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.01
PCDHGC3-204ENST00000617222 CADPSQ9ULU8 1353 aa27.47■■□□□ 1.99
PCDHGC3-204ENST00000617222 NESP48681 1621 aa27.44■■□□□ 1.98
PCDHGC3-204ENST00000617222 CFTRP13569 1480 aa27.36■■□□□ 1.97
PCDHGC3-204ENST00000617222 LAMC3Q9Y6N6 1575 aa27.34■■□□□ 1.97
PCDHGC3-204ENST00000617222 PDS5BQ9NTI5 1447 aa27.23■■□□□ 1.95
PCDHGC3-204ENST00000617222 ERCC6Q03468 1493 aa27.16■■□□□ 1.94
PCDHGC3-204ENST00000617222 FANCD2Q9BXW9 1451 aa27.13■■□□□ 1.93
PCDHGC3-204ENST00000617222 CEP164Q9UPV0 1460 aa27.03■■□□□ 1.92
PCDHGC3-204ENST00000617222 KIF21AQ7Z4S6 1674 aa27.01■■□□□ 1.91
PCDHGC3-204ENST00000617222 PRDM2Q13029 1718 aa27■■□□□ 1.91
PCDHGC3-204ENST00000617222 MRC2Q9UBG0 1479 aa26.89■■□□□ 1.9
PCDHGC3-204ENST00000617222 URB2Q14146 1524 aaKnown RBP26.81■■□□□ 1.88
PCDHGC3-204ENST00000617222 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
PCDHGC3-204ENST00000617222 WDR62O43379 1518 aa26.75■■□□□ 1.87
PCDHGC3-204ENST00000617222 ABCC8Q09428 1581 aa26.74■■□□□ 1.87
PCDHGC3-204ENST00000617222 TOPBP1Q92547 1522 aa26.73■■□□□ 1.87
PCDHGC3-204ENST00000617222 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.87
PCDHGC3-204ENST00000617222 DNMBPQ6XZF7 1577 aa26.7■■□□□ 1.86
PCDHGC3-204ENST00000617222 CUX1P39880 1505 aa26.7■■□□□ 1.86
PCDHGC3-204ENST00000617222 CUX2O14529 1486 aa26.65■■□□□ 1.86
PCDHGC3-204ENST00000617222 SYNJ1O43426 1573 aa26.58■■□□□ 1.85
PCDHGC3-204ENST00000617222 FGD5Q6ZNL6 1462 aa26.55■■□□□ 1.84
PCDHGC3-204ENST00000617222 POLA1P09884 1462 aaPredicted RBP26.54■■□□□ 1.84
PCDHGC3-204ENST00000617222 TOP2BQ02880 1626 aa26.54■■□□□ 1.84
PCDHGC3-204ENST00000617222 TRIM41Q8WV44 630 aa26.51■■□□□ 1.83
PCDHGC3-204ENST00000617222 BIVM-ERCC5R4GMW8 1640 aa26.5■■□□□ 1.83
PCDHGC3-204ENST00000617222 SOGA1O94964 1423 aa26.49■■□□□ 1.83
PCDHGC3-204ENST00000617222 CHIC1Q5VXU3 224 aa26.48■■□□□ 1.83
PCDHGC3-204ENST00000617222 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
PCDHGC3-204ENST00000617222 IFT140Q96RY7 1462 aa26.45■■□□□ 1.82
PCDHGC3-204ENST00000617222 TARBP1Q13395 1621 aaKnown RBP26.35■■□□□ 1.81
PCDHGC3-204ENST00000617222 ZNF608Q9ULD9 1512 aaPredicted RBP26.32■■□□□ 1.8
PCDHGC3-204ENST00000617222 TDRD9Q8NDG6 1382 aaKnown RBP26.31■■□□□ 1.8
PCDHGC3-204ENST00000617222 ABCA10Q8WWZ4 1543 aa26.29■■□□□ 1.8
PCDHGC3-204ENST00000617222 AQRO60306 1485 aaKnown RBP eCLIP26.27■■□□□ 1.8
PCDHGC3-204ENST00000617222 WDR97A6NE52 1622 aa26.17■■□□□ 1.78
PCDHGC3-204ENST00000617222 GAPVD1Q14C86 1478 aa26.16■■□□□ 1.78
PCDHGC3-204ENST00000617222 EIF4G3O43432 1585 aaKnown RBP26.14■■□□□ 1.78
PCDHGC3-204ENST00000617222 KIF27Q86VH2 1401 aa26.14■■□□□ 1.77
PCDHGC3-204ENST00000617222 ABCA5Q8WWZ7 1642 aa26.09■■□□□ 1.77
PCDHGC3-204ENST00000617222 GRIN2BQ13224 1484 aa26.08■■□□□ 1.77
PCDHGC3-204ENST00000617222 RUSC2Q8N2Y8 1516 aa26.07■■□□□ 1.76
PCDHGC3-204ENST00000617222 IGF1RP08069 1367 aa26.02■■□□□ 1.76
PCDHGC3-204ENST00000617222 FAM9AQ8IZU1 332 aaPredicted RBP26■■□□□ 1.75
PCDHGC3-204ENST00000617222 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
PCDHGC3-204ENST00000617222 ERICH3Q5RHP9 1530 aa25.96■■□□□ 1.75
PCDHGC3-204ENST00000617222 PBRM1Q86U86 1689 aa25.94■■□□□ 1.74
PCDHGC3-204ENST00000617222 FBLN2P98095 1184 aa25.94■■□□□ 1.74
PCDHGC3-204ENST00000617222 MAGI1Q96QZ7 1491 aaPredicted RBP25.93■■□□□ 1.74
PCDHGC3-204ENST00000617222 CSRNP3Q8WYN3 585 aa25.92■■□□□ 1.74
PCDHGC3-204ENST00000617222 CHMP7Q8WUX9 453 aaPredicted RBP25.91■■□□□ 1.74
PCDHGC3-204ENST00000617222 EEA1Q15075 1411 aa25.9■■□□□ 1.74
PCDHGC3-204ENST00000617222 CARMIL1Q5VZK9 1371 aa25.87■■□□□ 1.73
PCDHGC3-204ENST00000617222 FHAD1B1AJZ9 1412 aa25.87■■□□□ 1.73
PCDHGC3-204ENST00000617222 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
PCDHGC3-204ENST00000617222 ADAMTS12P58397 1594 aa25.82■■□□□ 1.72
PCDHGC3-204ENST00000617222 CUL7Q14999 1698 aa25.76■■□□□ 1.71
PCDHGC3-204ENST00000617222 OSCARQ8IYS5 282 aa25.75■■□□□ 1.71
PCDHGC3-204ENST00000617222 GRIN2AQ12879 1464 aa25.72■■□□□ 1.71
PCDHGC3-204ENST00000617222 PRXQ9BXM0 1461 aa25.72■■□□□ 1.71
PCDHGC3-204ENST00000617222 RAPGEF2Q9Y4G8 1499 aa25.72■■□□□ 1.71
PCDHGC3-204ENST00000617222 CHD1O14646 1710 aa25.7■■□□□ 1.7
PCDHGC3-204ENST00000617222 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
PCDHGC3-204ENST00000617222 NUP160Q12769 1436 aa25.6■■□□□ 1.69
PCDHGC3-204ENST00000617222 CEP170Q5SW79 1584 aa25.56■■□□□ 1.68
PCDHGC3-204ENST00000617222 KIF21BO75037 1637 aa25.55■■□□□ 1.68
PCDHGC3-204ENST00000617222 UBTFP17480 764 aaKnown RBP25.52■■□□□ 1.68
PCDHGC3-204ENST00000617222 GOLGA3Q08378 1498 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms