Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 LINC00982-205ENST00000420957 435 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 CHCHD2P8-201ENST00000429873 447 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 BX276092.5-203ENST00000456199 560 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AC022616.7-201ENST00000525383 220 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AL121672.3-201ENST00000608644 468 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AC012306.2-201ENST00000609350 630 ntBASIC12.16□□□□□ -0.46
AP1S3Q96PC3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
AP1S3Q96PC3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 NTF6B-201ENST00000591913 560 ntBASIC12.15□□□□□ -0.46
AP1S3Q96PC3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 AC005089.1-201ENST00000619486 2241 ntBASIC12.15□□□□□ -0.46
AP1S3Q96PC3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 INTS4P1-201ENST00000438455 1935 ntBASIC12.15□□□□□ -0.46
AP1S3Q96PC3 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
AP1S3Q96PC3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
AP1S3Q96PC3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms