RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 NISCHQ9Y2I1 1504 aa31.7■■■□□ 2.67
NUP88-207ENST00000573584 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
NUP88-207ENST00000573584 SUPT5HO00267 1087 aaKnown RBP26.91■■□□□ 1.9
NUP88-207ENST00000573584 ZCCHC6Q5VYS8 1495 aaKnown RBP26.85■■□□□ 1.89
NUP88-207ENST00000573584 CCDC180Q9P1Z9 1646 aa26.76■■□□□ 1.87
NUP88-207ENST00000573584 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
NUP88-207ENST00000573584 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
NUP88-207ENST00000573584 MYO15BQ96JP2 1530 aa26.15■■□□□ 1.78
NUP88-207ENST00000573584 DCAF1Q9Y4B6 1507 aa25.98■■□□□ 1.75
NUP88-207ENST00000573584 HRCP23327 699 aa25.87■■□□□ 1.73
NUP88-207ENST00000573584 PCGF6Q9BYE7 350 aa25.72■■□□□ 1.71
NUP88-207ENST00000573584 LOC105371045A0A1W2PR82 267 aa25.51■■□□□ 1.67
NUP88-207ENST00000573584 ABCC9O60706 1549 aa25.36■■□□□ 1.65
NUP88-207ENST00000573584 PPARGC1BQ86YN6 1023 aaKnown RBP25.3■■□□□ 1.64
NUP88-207ENST00000573584 RSF1Q96T23 1441 aaPredicted RBP25.21■■□□□ 1.63
NUP88-207ENST00000573584 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
NUP88-207ENST00000573584 TRIM26Q12899 539 aaPredicted RBP25.17■■□□□ 1.62
NUP88-207ENST00000573584 TRIM41Q8WV44 630 aa25.05■■□□□ 1.6
NUP88-207ENST00000573584 RB1CC1Q8TDY2 1594 aa24.94■■□□□ 1.58
NUP88-207ENST00000573584 FAM9AQ8IZU1 332 aaPredicted RBP24.86■■□□□ 1.57
NUP88-207ENST00000573584 NACADO15069 1562 aa24.74■■□□□ 1.55
NUP88-207ENST00000573584 CECR2Q9BXF3 1484 aa24.74■■□□□ 1.55
NUP88-207ENST00000573584 ZEB1P37275 1124 aaPredicted RBP24.73■■□□□ 1.55
NUP88-207ENST00000573584 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
NUP88-207ENST00000573584 EHMT2Q96KQ7 1210 aa24.65■■□□□ 1.54
NUP88-207ENST00000573584 WIZO95785 1651 aa24.52■■□□□ 1.52
NUP88-207ENST00000573584 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
NUP88-207ENST00000573584 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
NUP88-207ENST00000573584 TOP2AP11388 1531 aaKnown RBP24.14■■□□□ 1.46
NUP88-207ENST00000573584 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.12■■□□□ 1.45
NUP88-207ENST00000573584 CCDC88BA6NC98 1476 aa24.09■■□□□ 1.45
NUP88-207ENST00000573584 CCER1Q8TC90 406 aaPredicted RBP24.09■■□□□ 1.45
NUP88-207ENST00000573584 ABCC8Q09428 1581 aa24.09■■□□□ 1.45
NUP88-207ENST00000573584 SMARCA4P51532 1647 aa24.06■■□□□ 1.44
NUP88-207ENST00000573584 SMARCA2P51531 1590 aa24.02■■□□□ 1.44
NUP88-207ENST00000573584 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
NUP88-207ENST00000573584 SCAF1Q9H7N4 1312 aaKnown RBP23.98■■□□□ 1.43
NUP88-207ENST00000573584 CEP162Q5TB80 1403 aa23.95■■□□□ 1.43
NUP88-207ENST00000573584 SOGA1O94964 1423 aa23.95■■□□□ 1.42
NUP88-207ENST00000573584 TTBK1Q5TCY1 1321 aaPredicted RBP23.92■■□□□ 1.42
NUP88-207ENST00000573584 TNIKQ9UKE5 1360 aa23.91■■□□□ 1.42
NUP88-207ENST00000573584 CSRNP3Q8WYN3 585 aa23.88■■□□□ 1.41
NUP88-207ENST00000573584 UNC13AQ9UPW8 1703 aa23.86■■□□□ 1.41
NUP88-207ENST00000573584 EEA1Q15075 1411 aa23.86■■□□□ 1.41
NUP88-207ENST00000573584 UBTFP17480 764 aaKnown RBP23.83■■□□□ 1.41
NUP88-207ENST00000573584 RUSC2Q8N2Y8 1516 aa23.8■■□□□ 1.4
NUP88-207ENST00000573584 PELP1Q8IZL8 1130 aaKnown RBP23.79■■□□□ 1.4
NUP88-207ENST00000573584 DIEXFQ68CQ4 756 aaKnown RBP23.74■■□□□ 1.39
NUP88-207ENST00000573584 PABPN1Q86U42 306 aaKnown RBP eCLIP23.72■■□□□ 1.39
NUP88-207ENST00000573584 GOLGA3Q08378 1498 aa23.71■■□□□ 1.39
NUP88-207ENST00000573584 ACIN1Q9UKV3 1341 aaKnown RBP23.69■■□□□ 1.38
NUP88-207ENST00000573584 NEUROD1Q13562 356 aa23.63■■□□□ 1.37
NUP88-207ENST00000573584 BICRAQ9NZM4 1560 aa23.6■■□□□ 1.37
NUP88-207ENST00000573584 PEG3Q9GZU2 1588 aa23.58■■□□□ 1.37
NUP88-207ENST00000573584 CEP164Q9UPV0 1460 aa23.55■■□□□ 1.36
NUP88-207ENST00000573584 CENPBP07199 599 aaPredicted RBP23.55■■□□□ 1.36
NUP88-207ENST00000573584 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
NUP88-207ENST00000573584 ZNF316A6NFI3 1004 aaPredicted RBP23.5■■□□□ 1.35
NUP88-207ENST00000573584 KIF21BO75037 1637 aa23.47■■□□□ 1.35
NUP88-207ENST00000573584 CLIP1P30622 1438 aa23.47■■□□□ 1.35
NUP88-207ENST00000573584 HNRNPUL2Q1KMD3 747 aaKnown RBP23.45■■□□□ 1.34
NUP88-207ENST00000573584 GTF3C3Q9Y5Q9 886 aa23.43■■□□□ 1.34
NUP88-207ENST00000573584 ATAD2BQ9ULI0 1458 aa23.43■■□□□ 1.34
NUP88-207ENST00000573584 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.33
NUP88-207ENST00000573584 VPS8Q8N3P4 1428 aa23.39■■□□□ 1.33
NUP88-207ENST00000573584 APLP2Q06481 763 aa23.37■■□□□ 1.33
NUP88-207ENST00000573584 RAPGEF2Q9Y4G8 1499 aa23.34■■□□□ 1.33
NUP88-207ENST00000573584 RANGAP1P46060 587 aaPredicted RBP23.3■■□□□ 1.32
NUP88-207ENST00000573584 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
NUP88-207ENST00000573584 YTHDC1Q96MU7 727 aaKnown RBP23.2■■□□□ 1.3
NUP88-207ENST00000573584 MIER1Q8N108 512 aa23.19■■□□□ 1.3
NUP88-207ENST00000573584 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
NUP88-207ENST00000573584 PRXQ9BXM0 1461 aa23.08■■□□□ 1.29
NUP88-207ENST00000573584 ERICH3Q5RHP9 1530 aa23.07■■□□□ 1.28
NUP88-207ENST00000573584 ARAP1Q96P48 1450 aa23.02■■□□□ 1.28
NUP88-207ENST00000573584 CLSPNQ9HAW4 1339 aa23.02■■□□□ 1.28
NUP88-207ENST00000573584 KANK4Q5T7N3 995 aaPredicted RBP23■■□□□ 1.27
NUP88-207ENST00000573584 DHX57Q6P158 1386 aaKnown RBP22.98■■□□□ 1.27
NUP88-207ENST00000573584 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
NUP88-207ENST00000573584 CUX1P39880 1505 aa22.94■■□□□ 1.26
NUP88-207ENST00000573584 NCAPD3P42695 1498 aa22.93■■□□□ 1.26
NUP88-207ENST00000573584 HMGXB3Q12766 1538 aa22.9■■□□□ 1.26
NUP88-207ENST00000573584 RRBP1Q9P2E9 1410 aaKnown RBP22.87■■□□□ 1.25
NUP88-207ENST00000573584 CFTRP13569 1480 aa22.82■■□□□ 1.24
NUP88-207ENST00000573584 ARHGAP35Q9NRY4 1499 aa22.8■■□□□ 1.24
NUP88-207ENST00000573584 CCNB3Q8WWL7 1395 aa22.79■■□□□ 1.24
NUP88-207ENST00000573584 CUX2O14529 1486 aa22.75■■□□□ 1.23
NUP88-207ENST00000573584 ITGAEP38570 1179 aa22.74■■□□□ 1.23
NUP88-207ENST00000573584 IGF1RP08069 1367 aa22.68■■□□□ 1.22
NUP88-207ENST00000573584 MYT1Q01538 1121 aa22.63■■□□□ 1.21
NUP88-207ENST00000573584 RAB3GAP2Q9H2M9 1393 aa22.62■■□□□ 1.21
NUP88-207ENST00000573584 CARMIL1Q5VZK9 1371 aa22.59■■□□□ 1.21
NUP88-207ENST00000573584 MAP3K1Q13233 1512 aa22.57■■□□□ 1.2
NUP88-207ENST00000573584 TIAM1Q13009 1591 aa22.57■■□□□ 1.2
NUP88-207ENST00000573584 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
NUP88-207ENST00000573584 SETD5Q9C0A6 1442 aa22.52■■□□□ 1.2
NUP88-207ENST00000573584 MAPKBP1O60336 1514 aa22.52■■□□□ 1.2
NUP88-207ENST00000573584 SUPT16HQ9Y5B9 1047 aaKnown RBP22.52■■□□□ 1.2
NUP88-207ENST00000573584 PRDM2Q13029 1718 aa22.52■■□□□ 1.2
NUP88-207ENST00000573584 LRRC9Q6ZRR7 1453 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms