RNA–Protein interactions for RNA: ENST00000628696.2

SMN2-215, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 885 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-215ENST00000628696 NISCHQ9Y2I1 1504 aa47.52■■■■■ 5.2
SMN2-215ENST00000628696 ABCC9O60706 1549 aa42.83■■■■■ 4.45
SMN2-215ENST00000628696 CCDC180Q9P1Z9 1646 aa42.65■■■■■ 4.42
SMN2-215ENST00000628696 RB1CC1Q8TDY2 1594 aa40.68■■■■■ 4.1
SMN2-215ENST00000628696 NACADO15069 1562 aa40.36■■■■■ 4.05
SMN2-215ENST00000628696 DCAF8L2P0C7V8 631 aa40.35■■■■■ 4.05
SMN2-215ENST00000628696 DNAJC5BQ9UF47 199 aa40.26■■■■■ 4.04
SMN2-215ENST00000628696 PABPN1Q86U42 306 aaKnown RBP eCLIP39.91■■■■□ 3.98
SMN2-215ENST00000628696 UNC13AQ9UPW8 1703 aa39.78■■■■□ 3.96
SMN2-215ENST00000628696 MYO15BQ96JP2 1530 aa39.7■■■■□ 3.95
SMN2-215ENST00000628696 BICRAQ9NZM4 1560 aa39.47■■■■□ 3.91
SMN2-215ENST00000628696 ZCCHC6Q5VYS8 1495 aaKnown RBP39.33■■■■□ 3.89
SMN2-215ENST00000628696 DCAF1Q9Y4B6 1507 aa39.18■■■■□ 3.86
SMN2-215ENST00000628696 SCRIBQ14160 1630 aa38.94■■■■□ 3.82
SMN2-215ENST00000628696 SHROOM4Q9ULL8 1493 aa38.86■■■■□ 3.81
SMN2-215ENST00000628696 CC2D2AQ9P2K1 1620 aa38.66■■■■□ 3.78
SMN2-215ENST00000628696 CECR2Q9BXF3 1484 aa38.57■■■■□ 3.76
SMN2-215ENST00000628696 EIF4G1Q04637 1599 aaKnown RBP38.53■■■■□ 3.76
SMN2-215ENST00000628696 NCAPD3P42695 1498 aa37.26■■■■□ 3.55
SMN2-215ENST00000628696 ATAD2BQ9ULI0 1458 aa37.15■■■■□ 3.54
SMN2-215ENST00000628696 SMARCA4P51532 1647 aa37.1■■■■□ 3.53
SMN2-215ENST00000628696 SMARCA2P51531 1590 aa37.04■■■■□ 3.52
SMN2-215ENST00000628696 DNAJC5Q9H3Z4 198 aa37.02■■■■□ 3.52
SMN2-215ENST00000628696 ERCC6Q03468 1493 aa37■■■■□ 3.51
SMN2-215ENST00000628696 HMGXB3Q12766 1538 aa36.95■■■■□ 3.51
SMN2-215ENST00000628696 BAZ1AQ9NRL2 1556 aaPredicted RBP36.89■■■■□ 3.5
SMN2-215ENST00000628696 CUX2O14529 1486 aa36.88■■■■□ 3.49
SMN2-215ENST00000628696 BAZ1BQ9UIG0 1483 aaKnown RBP36.82■■■■□ 3.48
SMN2-215ENST00000628696 NESP48681 1621 aa36.76■■■■□ 3.48
SMN2-215ENST00000628696 PEG3Q9GZU2 1588 aa36.67■■■■□ 3.46
SMN2-215ENST00000628696 MROH2BQ7Z745 1585 aa36.64■■■■□ 3.46
SMN2-215ENST00000628696 LAMC3Q9Y6N6 1575 aa36.44■■■■□ 3.42
SMN2-215ENST00000628696 THOC2Q8NI27 1593 aaKnown RBP36.35■■■■□ 3.41
SMN2-215ENST00000628696 KIF21AQ7Z4S6 1674 aa36.28■■■■□ 3.4
SMN2-215ENST00000628696 PDS5BQ9NTI5 1447 aa36.26■■■■□ 3.4
SMN2-215ENST00000628696 WIZO95785 1651 aa36.23■■■■□ 3.39
SMN2-215ENST00000628696 CADPSQ9ULU8 1353 aa36.15■■■■□ 3.38
SMN2-215ENST00000628696 MRC2Q9UBG0 1479 aa35.94■■■■□ 3.34
SMN2-215ENST00000628696 RSF1Q96T23 1441 aaPredicted RBP35.84■■■■□ 3.33
SMN2-215ENST00000628696 WDR62O43379 1518 aa35.83■■■■□ 3.33
SMN2-215ENST00000628696 CEP164Q9UPV0 1460 aa35.8■■■■□ 3.32
SMN2-215ENST00000628696 FANCD2Q9BXW9 1451 aa35.75■■■■□ 3.31
SMN2-215ENST00000628696 TOP2AP11388 1531 aaKnown RBP35.71■■■■□ 3.31
SMN2-215ENST00000628696 CFTRP13569 1480 aa35.69■■■■□ 3.3
SMN2-215ENST00000628696 TRIM41Q8WV44 630 aa35.46■■■■□ 3.27
SMN2-215ENST00000628696 URB2Q14146 1524 aaKnown RBP35.45■■■■□ 3.27
SMN2-215ENST00000628696 PRDM2Q13029 1718 aa35.36■■■■□ 3.25
SMN2-215ENST00000628696 CCDC88BA6NC98 1476 aa35.35■■■■□ 3.25
SMN2-215ENST00000628696 OSCARQ8IYS5 282 aa35.27■■■■□ 3.24
SMN2-215ENST00000628696 IFT140Q96RY7 1462 aa35.07■■■■□ 3.2
SMN2-215ENST00000628696 TOPBP1Q92547 1522 aa35.06■■■■□ 3.2
SMN2-215ENST00000628696 ZNF608Q9ULD9 1512 aaPredicted RBP35.05■■■■□ 3.2
SMN2-215ENST00000628696 ABCC8Q09428 1581 aa34.96■■■■□ 3.19
SMN2-215ENST00000628696 DNMBPQ6XZF7 1577 aa34.91■■■■□ 3.18
SMN2-215ENST00000628696 EIF4G3O43432 1585 aaKnown RBP34.83■■■■□ 3.17
SMN2-215ENST00000628696 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
SMN2-215ENST00000628696 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
SMN2-215ENST00000628696 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
SMN2-215ENST00000628696 AQRO60306 1485 aaKnown RBP eCLIP34.74■■■■□ 3.15
SMN2-215ENST00000628696 TARBP1Q13395 1621 aaKnown RBP34.73■■■■□ 3.15
SMN2-215ENST00000628696 POLA1P09884 1462 aaPredicted RBP34.69■■■■□ 3.14
SMN2-215ENST00000628696 ARHGEF11O15085 1522 aa34.65■■■■□ 3.14
SMN2-215ENST00000628696 FBLN2P98095 1184 aa34.63■■■■□ 3.13
SMN2-215ENST00000628696 CHD1O14646 1710 aa34.63■■■■□ 3.13
SMN2-215ENST00000628696 RAD54L2Q9Y4B4 1467 aa34.61■■■■□ 3.13
SMN2-215ENST00000628696 SOGA1O94964 1423 aa34.57■■■■□ 3.13
SMN2-215ENST00000628696 TDRD9Q8NDG6 1382 aaKnown RBP34.53■■■■□ 3.12
SMN2-215ENST00000628696 CYB5RLQ6IPT4 315 aa34.5■■■■□ 3.11
SMN2-215ENST00000628696 FGD5Q6ZNL6 1462 aa34.48■■■■□ 3.11
SMN2-215ENST00000628696 CUX1P39880 1505 aa34.42■■■■□ 3.1
SMN2-215ENST00000628696 SNAPC4Q5SXM2 1469 aa34.36■■■■□ 3.09
SMN2-215ENST00000628696 SUPT5HO00267 1087 aaKnown RBP34.34■■■■□ 3.09
SMN2-215ENST00000628696 WDR97A6NE52 1622 aa34.33■■■■□ 3.09
SMN2-215ENST00000628696 CHMP7Q8WUX9 453 aaPredicted RBP34.31■■■■□ 3.08
SMN2-215ENST00000628696 ARAP1Q96P48 1450 aa34.3■■■■□ 3.08
SMN2-215ENST00000628696 GRIN2BQ13224 1484 aa34.25■■■■□ 3.07
SMN2-215ENST00000628696 MAGI1Q96QZ7 1491 aaPredicted RBP34.24■■■■□ 3.07
SMN2-215ENST00000628696 SYNJ1O43426 1573 aa34.17■■■■□ 3.06
SMN2-215ENST00000628696 TRHP20396 242 aaPredicted RBP34.17■■■■□ 3.06
SMN2-215ENST00000628696 CLASP1Q7Z460 1538 aa34.16■■■■□ 3.06
SMN2-215ENST00000628696 SYNJ2O15056 1496 aa34.14■■■■□ 3.06
SMN2-215ENST00000628696 GAPVD1Q14C86 1478 aa34.14■■■■□ 3.06
SMN2-215ENST00000628696 PBRM1Q86U86 1689 aa34.12■■■■□ 3.05
SMN2-215ENST00000628696 ABCA10Q8WWZ4 1543 aa34.05■■■■□ 3.04
SMN2-215ENST00000628696 ABCA5Q8WWZ7 1642 aa34■■■■□ 3.03
SMN2-215ENST00000628696 WRNQ14191 1432 aaPredicted RBP eCLIP33.93■■■■□ 3.02
SMN2-215ENST00000628696 TOP2BQ02880 1626 aa33.83■■■■□ 3.01
SMN2-215ENST00000628696 BIVM-ERCC5R4GMW8 1640 aa33.83■■■■□ 3.01
SMN2-215ENST00000628696 GRIN2AQ12879 1464 aa33.8■■■■□ 3
SMN2-215ENST00000628696 ADAMTS12P58397 1594 aa33.76■■■□□ 2.99
SMN2-215ENST00000628696 CEP170Q5SW79 1584 aa33.68■■■□□ 2.98
SMN2-215ENST00000628696 FHAD1B1AJZ9 1412 aa33.68■■■□□ 2.98
SMN2-215ENST00000628696 ERCC6L2Q5T890 1561 aa33.68■■■□□ 2.98
SMN2-215ENST00000628696 NUP160Q12769 1436 aa33.67■■■□□ 2.98
SMN2-215ENST00000628696 ERICH3Q5RHP9 1530 aa33.62■■■□□ 2.97
SMN2-215ENST00000628696 SHROOM2Q13796 1616 aa33.52■■■□□ 2.96
SMN2-215ENST00000628696 JPH4Q96JJ6 628 aa33.41■■■□□ 2.94
SMN2-215ENST00000628696 PRG4Q92954 1404 aaPredicted RBP33.41■■■□□ 2.94
SMN2-215ENST00000628696 RUSC2Q8N2Y8 1516 aa33.28■■■□□ 2.92
SMN2-215ENST00000628696 AEBP2Q6ZN18 517 aaPredicted RBP33.24■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 253.5 ms