RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 NISCHQ9Y2I1 1504 aa45.71■■■■■ 4.91
AC004540.1-201ENST00000439120 CCDC180Q9P1Z9 1646 aa40.96■■■■■ 4.15
AC004540.1-201ENST00000439120 ABCC9O60706 1549 aa40.69■■■■■ 4.1
AC004540.1-201ENST00000439120 RB1CC1Q8TDY2 1594 aa38.87■■■■□ 3.81
AC004540.1-201ENST00000439120 NACADO15069 1562 aa38.65■■■■□ 3.78
AC004540.1-201ENST00000439120 DCAF8L2P0C7V8 631 aa38.56■■■■□ 3.76
AC004540.1-201ENST00000439120 MYO15BQ96JP2 1530 aa38.16■■■■□ 3.7
AC004540.1-201ENST00000439120 UNC13AQ9UPW8 1703 aa37.96■■■■□ 3.67
AC004540.1-201ENST00000439120 ZCCHC6Q5VYS8 1495 aaKnown RBP37.93■■■■□ 3.66
AC004540.1-201ENST00000439120 PABPN1Q86U42 306 aaKnown RBP eCLIP37.91■■■■□ 3.66
AC004540.1-201ENST00000439120 DNAJC5BQ9UF47 199 aa37.83■■■■□ 3.65
AC004540.1-201ENST00000439120 DCAF1Q9Y4B6 1507 aa37.77■■■■□ 3.64
AC004540.1-201ENST00000439120 BICRAQ9NZM4 1560 aa37.64■■■■□ 3.62
AC004540.1-201ENST00000439120 SCRIBQ14160 1630 aa37.35■■■■□ 3.57
AC004540.1-201ENST00000439120 SHROOM4Q9ULL8 1493 aa37.23■■■■□ 3.55
AC004540.1-201ENST00000439120 CC2D2AQ9P2K1 1620 aa36.77■■■■□ 3.48
AC004540.1-201ENST00000439120 EIF4G1Q04637 1599 aaKnown RBP36.75■■■■□ 3.47
AC004540.1-201ENST00000439120 CECR2Q9BXF3 1484 aa36.63■■■■□ 3.45
AC004540.1-201ENST00000439120 NCAPD3P42695 1498 aa35.63■■■■□ 3.29
AC004540.1-201ENST00000439120 SMARCA4P51532 1647 aa35.63■■■■□ 3.29
AC004540.1-201ENST00000439120 ATAD2BQ9ULI0 1458 aa35.57■■■■□ 3.28
AC004540.1-201ENST00000439120 SMARCA2P51531 1590 aa35.54■■■■□ 3.28
AC004540.1-201ENST00000439120 BAZ1AQ9NRL2 1556 aaPredicted RBP35.51■■■■□ 3.27
AC004540.1-201ENST00000439120 HMGXB3Q12766 1538 aa35.42■■■■□ 3.26
AC004540.1-201ENST00000439120 BAZ1BQ9UIG0 1483 aaKnown RBP35.3■■■■□ 3.24
AC004540.1-201ENST00000439120 PEG3Q9GZU2 1588 aa35.25■■■■□ 3.23
AC004540.1-201ENST00000439120 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
AC004540.1-201ENST00000439120 ERCC6Q03468 1493 aa35.18■■■■□ 3.22
AC004540.1-201ENST00000439120 NESP48681 1621 aa34.99■■■■□ 3.19
AC004540.1-201ENST00000439120 CUX2O14529 1486 aa34.98■■■■□ 3.19
AC004540.1-201ENST00000439120 LAMC3Q9Y6N6 1575 aa34.85■■■■□ 3.17
AC004540.1-201ENST00000439120 WIZO95785 1651 aa34.83■■■■□ 3.17
AC004540.1-201ENST00000439120 PDS5BQ9NTI5 1447 aa34.64■■■■□ 3.14
AC004540.1-201ENST00000439120 DNAJC5Q9H3Z4 198 aa34.61■■■■□ 3.13
AC004540.1-201ENST00000439120 THOC2Q8NI27 1593 aaKnown RBP34.61■■■■□ 3.13
AC004540.1-201ENST00000439120 KIF21AQ7Z4S6 1674 aa34.6■■■■□ 3.13
AC004540.1-201ENST00000439120 CADPSQ9ULU8 1353 aa34.58■■■■□ 3.13
AC004540.1-201ENST00000439120 RSF1Q96T23 1441 aaPredicted RBP34.57■■■■□ 3.13
AC004540.1-201ENST00000439120 TOP2AP11388 1531 aaKnown RBP34.42■■■■□ 3.1
AC004540.1-201ENST00000439120 MRC2Q9UBG0 1479 aa34.32■■■■□ 3.08
AC004540.1-201ENST00000439120 CEP164Q9UPV0 1460 aa34.26■■■■□ 3.07
AC004540.1-201ENST00000439120 CFTRP13569 1480 aa34.23■■■■□ 3.07
AC004540.1-201ENST00000439120 FANCD2Q9BXW9 1451 aa34.21■■■■□ 3.07
AC004540.1-201ENST00000439120 WDR62O43379 1518 aa34.2■■■■□ 3.07
AC004540.1-201ENST00000439120 CCDC88BA6NC98 1476 aa34■■■■□ 3.03
AC004540.1-201ENST00000439120 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
AC004540.1-201ENST00000439120 URB2Q14146 1524 aaKnown RBP33.88■■■■□ 3.01
AC004540.1-201ENST00000439120 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
AC004540.1-201ENST00000439120 ABCC8Q09428 1581 aa33.56■■■□□ 2.96
AC004540.1-201ENST00000439120 IFT140Q96RY7 1462 aa33.54■■■□□ 2.96
AC004540.1-201ENST00000439120 DNMBPQ6XZF7 1577 aa33.51■■■□□ 2.95
AC004540.1-201ENST00000439120 OSCARQ8IYS5 282 aa33.43■■■□□ 2.94
AC004540.1-201ENST00000439120 ZNF608Q9ULD9 1512 aaPredicted RBP33.42■■■□□ 2.94
AC004540.1-201ENST00000439120 SUPT5HO00267 1087 aaKnown RBP33.31■■■□□ 2.92
AC004540.1-201ENST00000439120 TRIM41Q8WV44 630 aa33.3■■■□□ 2.92
AC004540.1-201ENST00000439120 EIF4G3O43432 1585 aaKnown RBP33.3■■■□□ 2.92
AC004540.1-201ENST00000439120 TARBP1Q13395 1621 aaKnown RBP33.25■■■□□ 2.91
AC004540.1-201ENST00000439120 POLA1P09884 1462 aaPredicted RBP33.25■■■□□ 2.91
AC004540.1-201ENST00000439120 AQRO60306 1485 aaKnown RBP eCLIP33.16■■■□□ 2.9
AC004540.1-201ENST00000439120 SOGA1O94964 1423 aa33.12■■■□□ 2.89
AC004540.1-201ENST00000439120 RAD54L2Q9Y4B4 1467 aa33.11■■■□□ 2.89
AC004540.1-201ENST00000439120 FGD5Q6ZNL6 1462 aa33.09■■■□□ 2.89
AC004540.1-201ENST00000439120 CUX1P39880 1505 aa33.07■■■□□ 2.89
AC004540.1-201ENST00000439120 CHD1O14646 1710 aa33.02■■■□□ 2.88
AC004540.1-201ENST00000439120 TDRD9Q8NDG6 1382 aaKnown RBP33.01■■■□□ 2.88
AC004540.1-201ENST00000439120 WDR97A6NE52 1622 aa32.98■■■□□ 2.87
AC004540.1-201ENST00000439120 FBLN2P98095 1184 aa32.97■■■□□ 2.87
AC004540.1-201ENST00000439120 RIMBP3CA6NJZ7 1639 aa32.95■■■□□ 2.87
AC004540.1-201ENST00000439120 RIMBP3BA6NNM3 1639 aa32.95■■■□□ 2.87
AC004540.1-201ENST00000439120 RIMBP3Q9UFD9 1639 aa32.95■■■□□ 2.87
AC004540.1-201ENST00000439120 ARHGEF11O15085 1522 aa32.87■■■□□ 2.85
AC004540.1-201ENST00000439120 SNAPC4Q5SXM2 1469 aa32.86■■■□□ 2.85
AC004540.1-201ENST00000439120 GRIN2BQ13224 1484 aa32.81■■■□□ 2.84
AC004540.1-201ENST00000439120 MAGI1Q96QZ7 1491 aaPredicted RBP32.79■■■□□ 2.84
AC004540.1-201ENST00000439120 CHMP7Q8WUX9 453 aaPredicted RBP32.75■■■□□ 2.83
AC004540.1-201ENST00000439120 GAPVD1Q14C86 1478 aa32.74■■■□□ 2.83
AC004540.1-201ENST00000439120 PBRM1Q86U86 1689 aa32.73■■■□□ 2.83
AC004540.1-201ENST00000439120 ABCA10Q8WWZ4 1543 aa32.72■■■□□ 2.83
AC004540.1-201ENST00000439120 WRNQ14191 1432 aaPredicted RBP eCLIP32.68■■■□□ 2.82
AC004540.1-201ENST00000439120 SYNJ2O15056 1496 aa32.67■■■□□ 2.82
AC004540.1-201ENST00000439120 SYNJ1O43426 1573 aa32.66■■■□□ 2.82
AC004540.1-201ENST00000439120 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
AC004540.1-201ENST00000439120 BIVM-ERCC5R4GMW8 1640 aa32.65■■■□□ 2.82
AC004540.1-201ENST00000439120 TOP2BQ02880 1626 aa32.64■■■□□ 2.82
AC004540.1-201ENST00000439120 CYB5RLQ6IPT4 315 aa32.63■■■□□ 2.81
AC004540.1-201ENST00000439120 CLASP1Q7Z460 1538 aa32.59■■■□□ 2.81
AC004540.1-201ENST00000439120 ARAP1Q96P48 1450 aa32.54■■■□□ 2.8
AC004540.1-201ENST00000439120 ADAMTS12P58397 1594 aa32.41■■■□□ 2.78
AC004540.1-201ENST00000439120 GRIN2AQ12879 1464 aa32.38■■■□□ 2.77
AC004540.1-201ENST00000439120 ERICH3Q5RHP9 1530 aa32.33■■■□□ 2.77
AC004540.1-201ENST00000439120 FHAD1B1AJZ9 1412 aa32.33■■■□□ 2.77
AC004540.1-201ENST00000439120 TRHP20396 242 aaPredicted RBP32.25■■■□□ 2.75
AC004540.1-201ENST00000439120 CEP170Q5SW79 1584 aa32.24■■■□□ 2.75
AC004540.1-201ENST00000439120 NUP160Q12769 1436 aa32.23■■■□□ 2.75
AC004540.1-201ENST00000439120 ERCC6L2Q5T890 1561 aa32.08■■■□□ 2.73
AC004540.1-201ENST00000439120 SHROOM2Q13796 1616 aa32.07■■■□□ 2.72
AC004540.1-201ENST00000439120 KIF27Q86VH2 1401 aa32.04■■■□□ 2.72
AC004540.1-201ENST00000439120 CUL7Q14999 1698 aa31.95■■■□□ 2.71
AC004540.1-201ENST00000439120 PRG4Q92954 1404 aaPredicted RBP31.94■■■□□ 2.7
AC004540.1-201ENST00000439120 RUSC2Q8N2Y8 1516 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms