RNA–Protein interactions for RNA: ENST00000274254.9

SKP2-201, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 1 (best) BASIC

Gene SKP2, Length 1,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-201ENST00000274254 NISCHQ9Y2I1 1504 aa40.74■■■■■ 4.11
SKP2-201ENST00000274254 CCDC180Q9P1Z9 1646 aa35.92■■■■□ 3.34
SKP2-201ENST00000274254 ABCC9O60706 1549 aa34.53■■■■□ 3.12
SKP2-201ENST00000274254 ZCCHC6Q5VYS8 1495 aaKnown RBP34.08■■■■□ 3.05
SKP2-201ENST00000274254 DCAF1Q9Y4B6 1507 aa33.75■■■□□ 2.99
SKP2-201ENST00000274254 DCAF8L2P0C7V8 631 aa33.71■■■□□ 2.99
SKP2-201ENST00000274254 MYO15BQ96JP2 1530 aa33.66■■■□□ 2.98
SKP2-201ENST00000274254 NACADO15069 1562 aa33.63■■■□□ 2.97
SKP2-201ENST00000274254 RB1CC1Q8TDY2 1594 aa33.5■■■□□ 2.95
SKP2-201ENST00000274254 SCRIBQ14160 1630 aa32.81■■■□□ 2.84
SKP2-201ENST00000274254 UNC13AQ9UPW8 1703 aa32.76■■■□□ 2.84
SKP2-201ENST00000274254 SHROOM4Q9ULL8 1493 aa32.52■■■□□ 2.8
SKP2-201ENST00000274254 BICRAQ9NZM4 1560 aa32.5■■■□□ 2.79
SKP2-201ENST00000274254 PABPN1Q86U42 306 aaKnown RBP eCLIP32.37■■■□□ 2.77
SKP2-201ENST00000274254 CECR2Q9BXF3 1484 aa31.67■■■□□ 2.66
SKP2-201ENST00000274254 EIF4G1Q04637 1599 aaKnown RBP31.57■■■□□ 2.64
SKP2-201ENST00000274254 BAZ1AQ9NRL2 1556 aaPredicted RBP31.52■■■□□ 2.64
SKP2-201ENST00000274254 SMARCA4P51532 1647 aa31.46■■■□□ 2.63
SKP2-201ENST00000274254 MROH2BQ7Z745 1585 aa31.4■■■□□ 2.62
SKP2-201ENST00000274254 RSF1Q96T23 1441 aaPredicted RBP31.28■■■□□ 2.6
SKP2-201ENST00000274254 CC2D2AQ9P2K1 1620 aa31.28■■■□□ 2.6
SKP2-201ENST00000274254 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
SKP2-201ENST00000274254 DNAJC5BQ9UF47 199 aa31.15■■■□□ 2.58
SKP2-201ENST00000274254 ATAD2BQ9ULI0 1458 aa31.15■■■□□ 2.58
SKP2-201ENST00000274254 SMARCA2P51531 1590 aa31.13■■■□□ 2.57
SKP2-201ENST00000274254 WIZO95785 1651 aa31.09■■■□□ 2.57
SKP2-201ENST00000274254 NCAPD3P42695 1498 aa31.04■■■□□ 2.56
SKP2-201ENST00000274254 HMGXB3Q12766 1538 aa30.94■■■□□ 2.54
SKP2-201ENST00000274254 SUPT5HO00267 1087 aaKnown RBP30.92■■■□□ 2.54
SKP2-201ENST00000274254 BAZ1BQ9UIG0 1483 aaKnown RBP30.9■■■□□ 2.54
SKP2-201ENST00000274254 TOP2AP11388 1531 aaKnown RBP30.8■■■□□ 2.52
SKP2-201ENST00000274254 CCDC88BA6NC98 1476 aa30.44■■■□□ 2.46
SKP2-201ENST00000274254 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
SKP2-201ENST00000274254 CFTRP13569 1480 aa30.12■■■□□ 2.41
SKP2-201ENST00000274254 LAMC3Q9Y6N6 1575 aa30.1■■■□□ 2.41
SKP2-201ENST00000274254 NESP48681 1621 aa30.08■■■□□ 2.41
SKP2-201ENST00000274254 PRDM2Q13029 1718 aa29.92■■■□□ 2.38
SKP2-201ENST00000274254 PDS5BQ9NTI5 1447 aa29.87■■■□□ 2.37
SKP2-201ENST00000274254 FANCD2Q9BXW9 1451 aa29.8■■■□□ 2.36
SKP2-201ENST00000274254 KIF21AQ7Z4S6 1674 aa29.73■■■□□ 2.35
SKP2-201ENST00000274254 ERCC6Q03468 1493 aa29.7■■■□□ 2.34
SKP2-201ENST00000274254 CEP164Q9UPV0 1460 aa29.7■■■□□ 2.34
SKP2-201ENST00000274254 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
SKP2-201ENST00000274254 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
SKP2-201ENST00000274254 THOC2Q8NI27 1593 aaKnown RBP29.5■■■□□ 2.31
SKP2-201ENST00000274254 URB2Q14146 1524 aaKnown RBP29.48■■■□□ 2.31
SKP2-201ENST00000274254 WRNQ14191 1432 aaPredicted RBP eCLIP29.46■■■□□ 2.31
SKP2-201ENST00000274254 CUX1P39880 1505 aa29.43■■■□□ 2.3
SKP2-201ENST00000274254 WDR62O43379 1518 aa29.42■■■□□ 2.3
SKP2-201ENST00000274254 DNMBPQ6XZF7 1577 aa29.41■■■□□ 2.3
SKP2-201ENST00000274254 TOPBP1Q92547 1522 aa29.41■■■□□ 2.3
SKP2-201ENST00000274254 SYNJ1O43426 1573 aa29.36■■■□□ 2.29
SKP2-201ENST00000274254 TOP2BQ02880 1626 aa29.34■■■□□ 2.29
SKP2-201ENST00000274254 BIVM-ERCC5R4GMW8 1640 aa29.32■■■□□ 2.28
SKP2-201ENST00000274254 CHIC1Q5VXU3 224 aa29.25■■■□□ 2.27
SKP2-201ENST00000274254 FGD5Q6ZNL6 1462 aa29.21■■■□□ 2.27
SKP2-201ENST00000274254 POLA1P09884 1462 aaPredicted RBP29.2■■■□□ 2.27
SKP2-201ENST00000274254 CUX2O14529 1486 aa29.18■■■□□ 2.26
SKP2-201ENST00000274254 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
SKP2-201ENST00000274254 SOGA1O94964 1423 aa29.08■■■□□ 2.25
SKP2-201ENST00000274254 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
SKP2-201ENST00000274254 IFT140Q96RY7 1462 aa29.05■■■□□ 2.24
SKP2-201ENST00000274254 TARBP1Q13395 1621 aaKnown RBP29.04■■■□□ 2.24
SKP2-201ENST00000274254 ABCA10Q8WWZ4 1543 aa28.98■■■□□ 2.23
SKP2-201ENST00000274254 WDR97A6NE52 1622 aa28.95■■■□□ 2.22
SKP2-201ENST00000274254 ZNF608Q9ULD9 1512 aaPredicted RBP28.88■■■□□ 2.21
SKP2-201ENST00000274254 TDRD9Q8NDG6 1382 aaKnown RBP28.84■■■□□ 2.21
SKP2-201ENST00000274254 ABCA5Q8WWZ7 1642 aa28.8■■■□□ 2.2
SKP2-201ENST00000274254 KIF27Q86VH2 1401 aa28.79■■■□□ 2.2
SKP2-201ENST00000274254 AQRO60306 1485 aaKnown RBP eCLIP28.79■■■□□ 2.24e-6■■■■□ 24.8
SKP2-201ENST00000274254 EIF4G3O43432 1585 aaKnown RBP28.78■■■□□ 2.2
SKP2-201ENST00000274254 GAPVD1Q14C86 1478 aa28.76■■■□□ 2.19
SKP2-201ENST00000274254 RUSC2Q8N2Y8 1516 aa28.74■■■□□ 2.19
SKP2-201ENST00000274254 EEA1Q15075 1411 aa28.67■■■□□ 2.18
SKP2-201ENST00000274254 GRIN2BQ13224 1484 aa28.66■■■□□ 2.18
SKP2-201ENST00000274254 PBRM1Q86U86 1689 aa28.64■■■□□ 2.18
SKP2-201ENST00000274254 ERICH3Q5RHP9 1530 aa28.64■■■□□ 2.18
SKP2-201ENST00000274254 IGF1RP08069 1367 aa28.61■■■□□ 2.17
SKP2-201ENST00000274254 SNAPC4Q5SXM2 1469 aa28.54■■■□□ 2.16
SKP2-201ENST00000274254 FAM9AQ8IZU1 332 aaPredicted RBP28.53■■■□□ 2.16
SKP2-201ENST00000274254 MAGI1Q96QZ7 1491 aaPredicted RBP28.53■■■□□ 2.16
SKP2-201ENST00000274254 CSRNP3Q8WYN3 585 aa28.53■■■□□ 2.16
SKP2-201ENST00000274254 CUL7Q14999 1698 aa28.48■■■□□ 2.15
SKP2-201ENST00000274254 ADAMTS12P58397 1594 aa28.47■■■□□ 2.15
SKP2-201ENST00000274254 FHAD1B1AJZ9 1412 aa28.45■■■□□ 2.14
SKP2-201ENST00000274254 CARMIL1Q5VZK9 1371 aa28.44■■■□□ 2.14
SKP2-201ENST00000274254 PRXQ9BXM0 1461 aa28.43■■■□□ 2.14
SKP2-201ENST00000274254 SYNJ2O15056 1496 aa28.41■■■□□ 2.14
SKP2-201ENST00000274254 RAPGEF2Q9Y4G8 1499 aa28.34■■■□□ 2.13
SKP2-201ENST00000274254 KIF21BO75037 1637 aa28.32■■■□□ 2.12
SKP2-201ENST00000274254 CHMP7Q8WUX9 453 aaPredicted RBP28.32■■■□□ 2.12
SKP2-201ENST00000274254 GRIN2AQ12879 1464 aa28.31■■■□□ 2.12
SKP2-201ENST00000274254 CHD1O14646 1710 aa28.29■■■□□ 2.12
SKP2-201ENST00000274254 FBLN2P98095 1184 aa28.28■■■□□ 2.12
SKP2-201ENST00000274254 GOLGA3Q08378 1498 aa28.19■■■□□ 2.1
SKP2-201ENST00000274254 NUP160Q12769 1436 aa28.17■■■□□ 2.1
SKP2-201ENST00000274254 CEP170Q5SW79 1584 aa28.14■■■□□ 2.1
SKP2-201ENST00000274254 EHMT2Q96KQ7 1210 aa28.1■■■□□ 2.09
SKP2-201ENST00000274254 OSCARQ8IYS5 282 aa28.08■■■□□ 2.08
SKP2-201ENST00000274254 LOC105371045A0A1W2PR82 267 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms