RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 NISCHQ9Y2I1 1504 aa29.26■■■□□ 2.27
NCKIPSD-204ENST00000416649 DCAF8L2P0C7V8 631 aa25.13■■□□□ 1.61
NCKIPSD-204ENST00000416649 SHROOM4Q9ULL8 1493 aa25.06■■□□□ 1.6
NCKIPSD-204ENST00000416649 CCDC180Q9P1Z9 1646 aa24.92■■□□□ 1.58
NCKIPSD-204ENST00000416649 HRCP23327 699 aa24.84■■□□□ 1.57
NCKIPSD-204ENST00000416649 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
NCKIPSD-204ENST00000416649 ZCCHC6Q5VYS8 1495 aaKnown RBP24.57■■□□□ 1.52
NCKIPSD-204ENST00000416649 PPARGC1BQ86YN6 1023 aaKnown RBP24.53■■□□□ 1.52
NCKIPSD-204ENST00000416649 PCGF6Q9BYE7 350 aa24.46■■□□□ 1.51
NCKIPSD-204ENST00000416649 ABCC9O60706 1549 aa24.13■■□□□ 1.45
NCKIPSD-204ENST00000416649 PELP1Q8IZL8 1130 aaKnown RBP24.13■■□□□ 1.45
NCKIPSD-204ENST00000416649 MYO15BQ96JP2 1530 aa24.01■■□□□ 1.43
NCKIPSD-204ENST00000416649 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
NCKIPSD-204ENST00000416649 DCAF1Q9Y4B6 1507 aa23.76■■□□□ 1.39
NCKIPSD-204ENST00000416649 SCAF1Q9H7N4 1312 aaKnown RBP23.66■■□□□ 1.38
NCKIPSD-204ENST00000416649 SCRIBQ14160 1630 aa23.66■■□□□ 1.38
NCKIPSD-204ENST00000416649 LOC105371045A0A1W2PR82 267 aa23.52■■□□□ 1.36
NCKIPSD-204ENST00000416649 TRIM26Q12899 539 aaPredicted RBP23.44■■□□□ 1.34
NCKIPSD-204ENST00000416649 EHMT2Q96KQ7 1210 aa23.37■■□□□ 1.33
NCKIPSD-204ENST00000416649 NACADO15069 1562 aa23.3■■□□□ 1.32
NCKIPSD-204ENST00000416649 ZEB1P37275 1124 aaPredicted RBP23.24■■□□□ 1.31
NCKIPSD-204ENST00000416649 MYT1Q01538 1121 aa23.19■■□□□ 1.3
NCKIPSD-204ENST00000416649 PABPN1Q86U42 306 aaKnown RBP eCLIP23.12■■□□□ 1.29
NCKIPSD-204ENST00000416649 RB1CC1Q8TDY2 1594 aa23.12■■□□□ 1.29
NCKIPSD-204ENST00000416649 CECR2Q9BXF3 1484 aa23.06■■□□□ 1.28
NCKIPSD-204ENST00000416649 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
NCKIPSD-204ENST00000416649 FAM9AQ8IZU1 332 aaPredicted RBP23.01■■□□□ 1.27
NCKIPSD-204ENST00000416649 ACIN1Q9UKV3 1341 aaKnown RBP23■■□□□ 1.27
NCKIPSD-204ENST00000416649 NEUROD1Q13562 356 aa22.99■■□□□ 1.27
NCKIPSD-204ENST00000416649 GTF3C3Q9Y5Q9 886 aa22.93■■□□□ 1.26
NCKIPSD-204ENST00000416649 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.25
NCKIPSD-204ENST00000416649 CENPBP07199 599 aaPredicted RBP22.75■■□□□ 1.23
NCKIPSD-204ENST00000416649 UNC13AQ9UPW8 1703 aa22.73■■□□□ 1.23
NCKIPSD-204ENST00000416649 WIZO95785 1651 aa22.68■■□□□ 1.22
NCKIPSD-204ENST00000416649 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.61■■□□□ 1.21
NCKIPSD-204ENST00000416649 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
NCKIPSD-204ENST00000416649 DIEXFQ68CQ4 756 aaKnown RBP22.59■■□□□ 1.21
NCKIPSD-204ENST00000416649 CCER1Q8TC90 406 aaPredicted RBP22.57■■□□□ 1.2
NCKIPSD-204ENST00000416649 TRIM41Q8WV44 630 aa22.53■■□□□ 1.2
NCKIPSD-204ENST00000416649 BICRAQ9NZM4 1560 aa22.51■■□□□ 1.19
NCKIPSD-204ENST00000416649 BAZ1AQ9NRL2 1556 aaPredicted RBP22.49■■□□□ 1.19
NCKIPSD-204ENST00000416649 YTHDC1Q96MU7 727 aaKnown RBP22.47■■□□□ 1.19
NCKIPSD-204ENST00000416649 SMARCA4P51532 1647 aa22.39■■□□□ 1.18
NCKIPSD-204ENST00000416649 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.15
NCKIPSD-204ENST00000416649 TOP2AP11388 1531 aaKnown RBP22.16■■□□□ 1.14
NCKIPSD-204ENST00000416649 SMARCA2P51531 1590 aa22.07■■□□□ 1.12
NCKIPSD-204ENST00000416649 ABCC8Q09428 1581 aa22.06■■□□□ 1.12
NCKIPSD-204ENST00000416649 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
NCKIPSD-204ENST00000416649 ATAD2BQ9ULI0 1458 aa22.03■■□□□ 1.12
NCKIPSD-204ENST00000416649 MIER1Q8N108 512 aa22■■□□□ 1.11
NCKIPSD-204ENST00000416649 BAZ1BQ9UIG0 1483 aaKnown RBP22■■□□□ 1.11
NCKIPSD-204ENST00000416649 BCL11AQ9H165 835 aa21.89■■□□□ 1.09
NCKIPSD-204ENST00000416649 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
NCKIPSD-204ENST00000416649 PEG3Q9GZU2 1588 aa21.81■■□□□ 1.08
NCKIPSD-204ENST00000416649 ANP32EQ9BTT0 268 aa21.76■■□□□ 1.07
NCKIPSD-204ENST00000416649 SOGA1O94964 1423 aa21.76■■□□□ 1.07
NCKIPSD-204ENST00000416649 RANGAP1P46060 587 aaPredicted RBP21.74■■□□□ 1.07
NCKIPSD-204ENST00000416649 SUPT16HQ9Y5B9 1047 aaKnown RBP21.7■■□□□ 1.06
NCKIPSD-204ENST00000416649 RUSC2Q8N2Y8 1516 aa21.7■■□□□ 1.06
NCKIPSD-204ENST00000416649 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.06
NCKIPSD-204ENST00000416649 TSHZ2Q9NRE2 1034 aa21.64■■□□□ 1.06
NCKIPSD-204ENST00000416649 UBTFP17480 764 aaKnown RBP21.64■■□□□ 1.05
NCKIPSD-204ENST00000416649 NCAPD3P42695 1498 aa21.63■■□□□ 1.05
NCKIPSD-204ENST00000416649 CSRNP3Q8WYN3 585 aa21.61■■□□□ 1.05
NCKIPSD-204ENST00000416649 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
NCKIPSD-204ENST00000416649 SYNJ1O43426 1573 aa21.55■■□□□ 1.04
NCKIPSD-204ENST00000416649 DNAJC5BQ9UF47 199 aa21.54■■□□□ 1.04
NCKIPSD-204ENST00000416649 CC2D2AQ9P2K1 1620 aa21.52■■□□□ 1.04
NCKIPSD-204ENST00000416649 HMGXB3Q12766 1538 aa21.48■■□□□ 1.03
NCKIPSD-204ENST00000416649 BCANQ96GW7 911 aa21.47■■□□□ 1.03
NCKIPSD-204ENST00000416649 CLSPNQ9HAW4 1339 aa21.43■■□□□ 1.02
NCKIPSD-204ENST00000416649 CEP162Q5TB80 1403 aa21.4■■□□□ 1.02
NCKIPSD-204ENST00000416649 CFTRP13569 1480 aa21.32■■□□□ 1
NCKIPSD-204ENST00000416649 CADPSQ9ULU8 1353 aa21.3■■□□□ 1
NCKIPSD-204ENST00000416649 NESP48681 1621 aa21.28■■□□□ 1
NCKIPSD-204ENST00000416649 CUX1P39880 1505 aa21.26■□□□□ 0.99
NCKIPSD-204ENST00000416649 EEA1Q15075 1411 aa21.23■□□□□ 0.99
NCKIPSD-204ENST00000416649 TOP2BQ02880 1626 aa21.22■□□□□ 0.99
NCKIPSD-204ENST00000416649 FKBP8Q14318 412 aa21.21■□□□□ 0.99
NCKIPSD-204ENST00000416649 GOLGA3Q08378 1498 aa21.2■□□□□ 0.98
NCKIPSD-204ENST00000416649 TNIKQ9UKE5 1360 aa21.2■□□□□ 0.98
NCKIPSD-204ENST00000416649 RAPGEF2Q9Y4G8 1499 aa21.2■□□□□ 0.98
NCKIPSD-204ENST00000416649 KCNH8Q96L42 1107 aa21.16■□□□□ 0.98
NCKIPSD-204ENST00000416649 RBM19Q9Y4C8 960 aaKnown RBP21.15■□□□□ 0.98
NCKIPSD-204ENST00000416649 CEP164Q9UPV0 1460 aa21.13■□□□□ 0.97
NCKIPSD-204ENST00000416649 FANCD2Q9BXW9 1451 aa21.11■□□□□ 0.97
NCKIPSD-204ENST00000416649 ITGAEP38570 1179 aa21.1■□□□□ 0.97
NCKIPSD-204ENST00000416649 APLP2Q06481 763 aa21.08■□□□□ 0.97
NCKIPSD-204ENST00000416649 BIVM-ERCC5R4GMW8 1640 aa21.07■□□□□ 0.96
NCKIPSD-204ENST00000416649 CUX2O14529 1486 aa21.06■□□□□ 0.96
NCKIPSD-204ENST00000416649 CLIP1P30622 1438 aa21.05■□□□□ 0.96
NCKIPSD-204ENST00000416649 KIF27Q86VH2 1401 aa21.05■□□□□ 0.96
NCKIPSD-204ENST00000416649 NEFLP07196 543 aa21.03■□□□□ 0.96
NCKIPSD-204ENST00000416649 PRKCSHP14314 528 aaPredicted RBP21.03■□□□□ 0.96
NCKIPSD-204ENST00000416649 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
NCKIPSD-204ENST00000416649 RAD54L2Q9Y4B4 1467 aa21■□□□□ 0.95
NCKIPSD-204ENST00000416649 ERICH6Q7L0X2 663 aa20.98■□□□□ 0.95
NCKIPSD-204ENST00000416649 KIF21BO75037 1637 aa20.96■□□□□ 0.95
NCKIPSD-204ENST00000416649 MSH5O43196 834 aa20.94■□□□□ 0.94
NCKIPSD-204ENST00000416649 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms