Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
NKX2-2O95096 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX2-2O95096 AC019171.1-201ENST00000601251 1056 ntBASIC21.75■■□□□ 1.07
NKX2-2O95096 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
NKX2-2O95096 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NKX2-2O95096 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.74■■□□□ 1.07
NKX2-2O95096 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.74■■□□□ 1.07
NKX2-2O95096 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.74■■□□□ 1.07
NKX2-2O95096 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NKX2-2O95096 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-2O95096 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX2-2O95096 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-2O95096 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX2-2O95096 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-2O95096 AC135731.1-201ENST00000569415 2548 ntBASIC21.72■■□□□ 1.07
NKX2-2O95096 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-2O95096 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.72■■□□□ 1.07
NKX2-2O95096 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-2O95096 AC074183.2-201ENST00000623112 922 ntBASIC21.72■■□□□ 1.07
NKX2-2O95096 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-2O95096 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.72■■□□□ 1.07
NKX2-2O95096 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.72■■□□□ 1.07
NKX2-2O95096 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX2-2O95096 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
NKX2-2O95096 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.71■■□□□ 1.07
NKX2-2O95096 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
NKX2-2O95096 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NKX2-2O95096 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
NKX2-2O95096 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-2O95096 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NKX2-2O95096 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.7■■□□□ 1.06
NKX2-2O95096 BHLHE23-202ENST00000612929 1109 ntBASIC21.7■■□□□ 1.06
NKX2-2O95096 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NKX2-2O95096 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.7■■□□□ 1.06
NKX2-2O95096 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.69■■□□□ 1.06
NKX2-2O95096 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.69■■□□□ 1.06
NKX2-2O95096 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NKX2-2O95096 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NKX2-2O95096 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.68■■□□□ 1.06
NKX2-2O95096 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.68■■□□□ 1.06
NKX2-2O95096 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX2-2O95096 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NKX2-2O95096 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
NKX2-2O95096 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX2-2O95096 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.68■■□□□ 1.06
NKX2-2O95096 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NKX2-2O95096 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX2-2O95096 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX2-2O95096 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.67■■□□□ 1.06
NKX2-2O95096 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.67■■□□□ 1.06
NKX2-2O95096 AC090877.2-201ENST00000558441 1738 ntBASIC21.67■■□□□ 1.06
NKX2-2O95096 AL033527.3-201ENST00000566366 1196 ntBASIC21.67■■□□□ 1.06
NKX2-2O95096 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NKX2-2O95096 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.67■■□□□ 1.06
NKX2-2O95096 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.67■■□□□ 1.06
NKX2-2O95096 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX2-2O95096 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NKX2-2O95096 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
NKX2-2O95096 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
NKX2-2O95096 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NKX2-2O95096 AC022616.5-201ENST00000518796 181 ntBASIC21.66■■□□□ 1.06
NKX2-2O95096 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NKX2-2O95096 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.66■■□□□ 1.06
NKX2-2O95096 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.66■■□□□ 1.06
NKX2-2O95096 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
NKX2-2O95096 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NKX2-2O95096 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NKX2-2O95096 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-2O95096 PVT1_1.1-201ENST00000615125 194 ntBASIC21.65■■□□□ 1.06
NKX2-2O95096 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.64■■□□□ 1.06
NKX2-2O95096 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NKX2-2O95096 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NKX2-2O95096 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-2O95096 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-2O95096 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-2O95096 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-2O95096 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms