Protein–RNA interactions for Protein: Q8WXH0

SYNE2, Nesprin-2, humanhuman

Known RBP Predictions only

Length 6,885 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2Q8WXH0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC12.75□□□□□ -0.37
SYNE2Q8WXH0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC12.75□□□□□ -0.37
SYNE2Q8WXH0 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
SYNE2Q8WXH0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SYNE2Q8WXH0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SYNE2Q8WXH0 AL031258.1-201ENST00000623562 325 ntBASIC12.7□□□□□ -0.38
SYNE2Q8WXH0 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC12.7□□□□□ -0.38
SYNE2Q8WXH0 AL162393.1-201ENST00000437852 946 ntBASIC12.69□□□□□ -0.38
SYNE2Q8WXH0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SYNE2Q8WXH0 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SYNE2Q8WXH0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC12.67□□□□□ -0.38
SYNE2Q8WXH0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC12.66□□□□□ -0.38
SYNE2Q8WXH0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SYNE2Q8WXH0 SETD8P1-201ENST00000623146 1180 ntBASIC12.64□□□□□ -0.39
SYNE2Q8WXH0 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC12.64□□□□□ -0.39
SYNE2Q8WXH0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SYNE2Q8WXH0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SYNE2Q8WXH0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC12.63□□□□□ -0.39
SYNE2Q8WXH0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SYNE2Q8WXH0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SYNE2Q8WXH0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC12.62□□□□□ -0.39
SYNE2Q8WXH0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC12.61□□□□□ -0.39
SYNE2Q8WXH0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC12.6□□□□□ -0.39
SYNE2Q8WXH0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SYNE2Q8WXH0 AP006261.1-201ENST00000584783 668 ntBASIC12.59□□□□□ -0.39
SYNE2Q8WXH0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC12.57□□□□□ -0.4
SYNE2Q8WXH0 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SYNE2Q8WXH0 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SYNE2Q8WXH0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SYNE2Q8WXH0 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC12.52□□□□□ -0.41
SYNE2Q8WXH0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC12.51□□□□□ -0.41
SYNE2Q8WXH0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC12.51□□□□□ -0.41
SYNE2Q8WXH0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC12.49□□□□□ -0.41
SYNE2Q8WXH0 HSD17B1P1-201ENST00000590052 955 ntBASIC12.49□□□□□ -0.41
SYNE2Q8WXH0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC12.48□□□□□ -0.41
SYNE2Q8WXH0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SYNE2Q8WXH0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SYNE2Q8WXH0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC12.46□□□□□ -0.41
SYNE2Q8WXH0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SYNE2Q8WXH0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC12.45□□□□□ -0.42
SYNE2Q8WXH0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
SYNE2Q8WXH0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC12.44□□□□□ -0.42
SYNE2Q8WXH0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
SYNE2Q8WXH0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC12.43□□□□□ -0.42
SYNE2Q8WXH0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC12.42□□□□□ -0.42
SYNE2Q8WXH0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SYNE2Q8WXH0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC12.41□□□□□ -0.42
SYNE2Q8WXH0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
SYNE2Q8WXH0 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC12.38□□□□□ -0.43
SYNE2Q8WXH0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
SYNE2Q8WXH0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
SYNE2Q8WXH0 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
SYNE2Q8WXH0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC12.38□□□□□ -0.43
SYNE2Q8WXH0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC12.37□□□□□ -0.43
SYNE2Q8WXH0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
SYNE2Q8WXH0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC12.36□□□□□ -0.43
SYNE2Q8WXH0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC12.36□□□□□ -0.43
SYNE2Q8WXH0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SYNE2Q8WXH0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC12.34□□□□□ -0.43
SYNE2Q8WXH0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SYNE2Q8WXH0 MIR4449-201ENST00000578365 66 ntBASIC12.34□□□□□ -0.43
SYNE2Q8WXH0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC12.34□□□□□ -0.43
SYNE2Q8WXH0 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SYNE2Q8WXH0 MIR3665-201ENST00000578708 105 ntBASIC12.32□□□□□ -0.44
SYNE2Q8WXH0 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SYNE2Q8WXH0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC12.31□□□□□ -0.44
SYNE2Q8WXH0 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SYNE2Q8WXH0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SYNE2Q8WXH0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SYNE2Q8WXH0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC12.3□□□□□ -0.44
SYNE2Q8WXH0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
SYNE2Q8WXH0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
SYNE2Q8WXH0 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SYNE2Q8WXH0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SYNE2Q8WXH0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
SYNE2Q8WXH0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC12.26□□□□□ -0.45
SYNE2Q8WXH0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC12.26□□□□□ -0.45
SYNE2Q8WXH0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
SYNE2Q8WXH0 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
SYNE2Q8WXH0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
SYNE2Q8WXH0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
SYNE2Q8WXH0 CAHM-201ENST00000604200 896 ntBASIC12.24□□□□□ -0.45
SYNE2Q8WXH0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SYNE2Q8WXH0 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC12.23□□□□□ -0.45
SYNE2Q8WXH0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
SYNE2Q8WXH0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC12.22□□□□□ -0.45
SYNE2Q8WXH0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC12.22□□□□□ -0.45
SYNE2Q8WXH0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC12.21□□□□□ -0.45
SYNE2Q8WXH0 HNRNPLP2-201ENST00000568980 1570 ntBASIC12.21□□□□□ -0.45
SYNE2Q8WXH0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC12.21□□□□□ -0.46
SYNE2Q8WXH0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC12.21□□□□□ -0.46
SYNE2Q8WXH0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC12.2□□□□□ -0.46
SYNE2Q8WXH0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SYNE2Q8WXH0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SYNE2Q8WXH0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SYNE2Q8WXH0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC12.19□□□□□ -0.46
SYNE2Q8WXH0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC12.18□□□□□ -0.46
SYNE2Q8WXH0 AC087741.3-201ENST00000624270 1347 ntBASIC12.18□□□□□ -0.46
SYNE2Q8WXH0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SYNE2Q8WXH0 MIR639-201ENST00000384974 98 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms