Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
SYNE1Q8NF91 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC8.85□□□□□ -0.99
SYNE1Q8NF91 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
SYNE1Q8NF91 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC8.83□□□□□ -1
SYNE1Q8NF91 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC8.83□□□□□ -1
SYNE1Q8NF91 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC8.83□□□□□ -1
SYNE1Q8NF91 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
SYNE1Q8NF91 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC8.83□□□□□ -1
SYNE1Q8NF91 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
SYNE1Q8NF91 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC8.81□□□□□ -1
SYNE1Q8NF91 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC8.8□□□□□ -1
SYNE1Q8NF91 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
SYNE1Q8NF91 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
SYNE1Q8NF91 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC8.78□□□□□ -1
SYNE1Q8NF91 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC8.78□□□□□ -1
SYNE1Q8NF91 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
SYNE1Q8NF91 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC8.78□□□□□ -1
SYNE1Q8NF91 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC8.78□□□□□ -1
SYNE1Q8NF91 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
SYNE1Q8NF91 RARRES2P7-201ENST00000567349 469 ntBASIC8.77□□□□□ -1.01
SYNE1Q8NF91 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
SYNE1Q8NF91 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
SYNE1Q8NF91 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
SYNE1Q8NF91 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
SYNE1Q8NF91 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
SYNE1Q8NF91 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC8.74□□□□□ -1.01
SYNE1Q8NF91 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
SYNE1Q8NF91 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC8.74□□□□□ -1.01
SYNE1Q8NF91 AC136428.2-201ENST00000563187 214 ntBASIC8.74□□□□□ -1.01
SYNE1Q8NF91 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
SYNE1Q8NF91 SETD8P1-201ENST00000623146 1180 ntBASIC8.73□□□□□ -1.01
SYNE1Q8NF91 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC8.73□□□□□ -1.01
SYNE1Q8NF91 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
SYNE1Q8NF91 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
SYNE1Q8NF91 AC097358.2-201ENST00000607541 1159 ntBASIC8.7□□□□□ -1.02
SYNE1Q8NF91 SUZ12P1-203ENST00000578195 985 ntBASIC8.7□□□□□ -1.02
SYNE1Q8NF91 AC145285.7-201ENST00000614819 1539 ntBASIC8.69□□□□□ -1.02
SYNE1Q8NF91 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
SYNE1Q8NF91 RPS2P35-201ENST00000443417 897 ntBASIC8.67□□□□□ -1.02
SYNE1Q8NF91 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC8.67□□□□□ -1.02
SYNE1Q8NF91 EBPL-203ENST00000378270 579 ntTSL 2 BASIC8.67□□□□□ -1.02
SYNE1Q8NF91 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC8.67□□□□□ -1.02
SYNE1Q8NF91 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC8.66□□□□□ -1.02
SYNE1Q8NF91 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC8.66□□□□□ -1.02
SYNE1Q8NF91 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC8.66□□□□□ -1.02
SYNE1Q8NF91 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC8.66□□□□□ -1.02
SYNE1Q8NF91 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC8.66□□□□□ -1.02
SYNE1Q8NF91 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SYNE1Q8NF91 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SYNE1Q8NF91 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC8.65□□□□□ -1.03
SYNE1Q8NF91 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC8.65□□□□□ -1.03
SYNE1Q8NF91 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
SYNE1Q8NF91 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
SYNE1Q8NF91 KLF16-203ENST00000592313 508 ntTSL 3 BASIC8.63□□□□□ -1.03
SYNE1Q8NF91 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
SYNE1Q8NF91 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
SYNE1Q8NF91 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
SYNE1Q8NF91 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
SYNE1Q8NF91 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
SYNE1Q8NF91 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC8.62□□□□□ -1.03
SYNE1Q8NF91 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC8.61□□□□□ -1.03
SYNE1Q8NF91 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
SYNE1Q8NF91 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
SYNE1Q8NF91 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 NRG1-221ENST00000614767 762 ntTSL 5 BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
SYNE1Q8NF91 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC8.59□□□□□ -1.03
SYNE1Q8NF91 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
SYNE1Q8NF91 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
SYNE1Q8NF91 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
SYNE1Q8NF91 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC8.59□□□□□ -1.03
SYNE1Q8NF91 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC8.59□□□□□ -1.04
SYNE1Q8NF91 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
SYNE1Q8NF91 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
SYNE1Q8NF91 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
SYNE1Q8NF91 AL391121.1-201ENST00000607967 1349 ntBASIC8.56□□□□□ -1.04
SYNE1Q8NF91 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC8.55□□□□□ -1.04
SYNE1Q8NF91 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
SYNE1Q8NF91 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
SYNE1Q8NF91 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
SYNE1Q8NF91 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.04
SYNE1Q8NF91 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
SYNE1Q8NF91 ILK-212ENST00000532063 1617 ntTSL 2 BASIC8.52□□□□□ -1.05
SYNE1Q8NF91 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC8.52□□□□□ -1.05
SYNE1Q8NF91 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
SYNE1Q8NF91 CAHM-201ENST00000604200 896 ntBASIC8.51□□□□□ -1.05
SYNE1Q8NF91 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
SYNE1Q8NF91 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
SYNE1Q8NF91 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC8.5□□□□□ -1.05
SYNE1Q8NF91 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
SYNE1Q8NF91 AL133380.1-201ENST00000506013 324 ntBASIC8.5□□□□□ -1.05
SYNE1Q8NF91 AL162393.1-201ENST00000437852 946 ntBASIC8.5□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms