Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL031258.1-201ENST00000623562 325 ntBASIC34.5■■■■□ 3.11
SHROOM1Q2M3G4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM1Q2M3G4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
SHROOM1Q2M3G4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC34.47■■■■□ 3.11
SHROOM1Q2M3G4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC34.39■■■■□ 3.1
SHROOM1Q2M3G4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM1Q2M3G4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
SHROOM1Q2M3G4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC34.33■■■■□ 3.09
SHROOM1Q2M3G4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
SHROOM1Q2M3G4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM1Q2M3G4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC34.23■■■■□ 3.07
SHROOM1Q2M3G4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC34.23■■■■□ 3.07
SHROOM1Q2M3G4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM1Q2M3G4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC34.18■■■■□ 3.06
SHROOM1Q2M3G4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM1Q2M3G4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
SHROOM1Q2M3G4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM1Q2M3G4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC34.08■■■■□ 3.05
SHROOM1Q2M3G4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM1Q2M3G4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM1Q2M3G4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM1Q2M3G4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SHROOM1Q2M3G4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC33.99■■■■□ 3.03
SHROOM1Q2M3G4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC33.98■■■■□ 3.03
SHROOM1Q2M3G4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC33.98■■■■□ 3.03
SHROOM1Q2M3G4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC33.96■■■■□ 3.03
SHROOM1Q2M3G4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC33.94■■■■□ 3.02
SHROOM1Q2M3G4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC33.94■■■■□ 3.02
SHROOM1Q2M3G4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC33.91■■■■□ 3.02
SHROOM1Q2M3G4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
SHROOM1Q2M3G4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC33.9■■■■□ 3.02
SHROOM1Q2M3G4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC33.89■■■■□ 3.02
SHROOM1Q2M3G4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC33.87■■■■□ 3.01
SHROOM1Q2M3G4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC33.83■■■■□ 3.01
SHROOM1Q2M3G4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC33.82■■■■□ 3
SHROOM1Q2M3G4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SHROOM1Q2M3G4 RARRES2P7-201ENST00000567349 469 ntBASIC33.78■■■■□ 3
SHROOM1Q2M3G4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC33.77■■■■□ 3
SHROOM1Q2M3G4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
SHROOM1Q2M3G4 AC145285.7-201ENST00000614819 1539 ntBASIC33.75■■■□□ 2.99
SHROOM1Q2M3G4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC33.75■■■□□ 2.99
SHROOM1Q2M3G4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC33.72■■■□□ 2.99
SHROOM1Q2M3G4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
SHROOM1Q2M3G4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM1Q2M3G4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM1Q2M3G4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM1Q2M3G4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM1Q2M3G4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC33.65■■■□□ 2.98
SHROOM1Q2M3G4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM1Q2M3G4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC33.6■■■□□ 2.97
SHROOM1Q2M3G4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC33.59■■■□□ 2.97
SHROOM1Q2M3G4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM1Q2M3G4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC33.58■■■□□ 2.97
SHROOM1Q2M3G4 AC136428.2-201ENST00000563187 214 ntBASIC33.58■■■□□ 2.97
SHROOM1Q2M3G4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM1Q2M3G4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.58■■■□□ 2.97
SHROOM1Q2M3G4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC33.57■■■□□ 2.96
SHROOM1Q2M3G4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM1Q2M3G4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM1Q2M3G4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC33.54■■■□□ 2.96
SHROOM1Q2M3G4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM1Q2M3G4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC33.53■■■□□ 2.96
SHROOM1Q2M3G4 AC097358.2-201ENST00000607541 1159 ntBASIC33.53■■■□□ 2.96
SHROOM1Q2M3G4 SETD8P1-201ENST00000623146 1180 ntBASIC33.53■■■□□ 2.96
SHROOM1Q2M3G4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC33.47■■■□□ 2.95
SHROOM1Q2M3G4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM1Q2M3G4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
SHROOM1Q2M3G4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC33.44■■■□□ 2.94
SHROOM1Q2M3G4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.44■■■□□ 2.94
SHROOM1Q2M3G4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM1Q2M3G4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM1Q2M3G4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC33.42■■■□□ 2.94
SHROOM1Q2M3G4 MVK-208ENST00000539696 608 ntTSL 5 BASIC33.4■■■□□ 2.94
SHROOM1Q2M3G4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC33.39■■■□□ 2.94
SHROOM1Q2M3G4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM1Q2M3G4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM1Q2M3G4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.37■■■□□ 2.93
SHROOM1Q2M3G4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.36■■■□□ 2.93
SHROOM1Q2M3G4 SUZ12P1-203ENST00000578195 985 ntBASIC33.36■■■□□ 2.93
SHROOM1Q2M3G4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
SHROOM1Q2M3G4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
SHROOM1Q2M3G4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC33.32■■■□□ 2.92
SHROOM1Q2M3G4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
SHROOM1Q2M3G4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
SHROOM1Q2M3G4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC33.23■■■□□ 2.91
SHROOM1Q2M3G4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM1Q2M3G4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.21■■■□□ 2.91
SHROOM1Q2M3G4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.2■■■□□ 2.9
SHROOM1Q2M3G4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM1Q2M3G4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SHROOM1Q2M3G4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SHROOM1Q2M3G4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.16■■■□□ 2.9
SHROOM1Q2M3G4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM1Q2M3G4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.14■■■□□ 2.9
SHROOM1Q2M3G4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM1Q2M3G4 CAHM-201ENST00000604200 896 ntBASIC33.13■■■□□ 2.89
SHROOM1Q2M3G4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM1Q2M3G4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.13■■■□□ 2.89
SHROOM1Q2M3G4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
SHROOM1Q2M3G4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms