Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
CHRNA1P02708 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHRNA1P02708 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.17■■■□□ 2.74
CHRNA1P02708 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHRNA1P02708 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.1■■■□□ 2.73
CHRNA1P02708 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.08■■■□□ 2.73
CHRNA1P02708 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
CHRNA1P02708 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.05■■■□□ 2.72
CHRNA1P02708 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.05■■■□□ 2.72
CHRNA1P02708 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
CHRNA1P02708 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.72
CHRNA1P02708 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CHRNA1P02708 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CHRNA1P02708 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CHRNA1P02708 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CHRNA1P02708 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CHRNA1P02708 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.91■■■□□ 2.7
CHRNA1P02708 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.89■■■□□ 2.7
CHRNA1P02708 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.89■■■□□ 2.7
CHRNA1P02708 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CHRNA1P02708 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.83■■■□□ 2.69
CHRNA1P02708 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CHRNA1P02708 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.68
CHRNA1P02708 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
CHRNA1P02708 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CHRNA1P02708 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
CHRNA1P02708 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.76■■■□□ 2.67
CHRNA1P02708 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CHRNA1P02708 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CHRNA1P02708 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.73■■■□□ 2.67
CHRNA1P02708 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.71■■■□□ 2.67
CHRNA1P02708 RARRES2P7-201ENST00000567349 469 ntBASIC31.71■■■□□ 2.67
CHRNA1P02708 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.7■■■□□ 2.67
CHRNA1P02708 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.7■■■□□ 2.67
CHRNA1P02708 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
CHRNA1P02708 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CHRNA1P02708 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CHRNA1P02708 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.59■■■□□ 2.65
CHRNA1P02708 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHRNA1P02708 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.57■■■□□ 2.64
CHRNA1P02708 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.55■■■□□ 2.64
CHRNA1P02708 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CHRNA1P02708 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CHRNA1P02708 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.52■■■□□ 2.64
CHRNA1P02708 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHRNA1P02708 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.51■■■□□ 2.63
CHRNA1P02708 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.5■■■□□ 2.63
CHRNA1P02708 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.49■■■□□ 2.63
CHRNA1P02708 AC097358.2-201ENST00000607541 1159 ntBASIC31.48■■■□□ 2.63
CHRNA1P02708 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CHRNA1P02708 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.47■■■□□ 2.63
CHRNA1P02708 SETD8P1-201ENST00000623146 1180 ntBASIC31.45■■■□□ 2.63
CHRNA1P02708 AC136428.2-201ENST00000563187 214 ntBASIC31.44■■■□□ 2.62
CHRNA1P02708 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
CHRNA1P02708 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CHRNA1P02708 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.43■■■□□ 2.62
CHRNA1P02708 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.42■■■□□ 2.62
CHRNA1P02708 AC145285.7-201ENST00000614819 1539 ntBASIC31.42■■■□□ 2.62
CHRNA1P02708 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.39■■■□□ 2.62
CHRNA1P02708 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.39■■■□□ 2.62
CHRNA1P02708 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CHRNA1P02708 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.32■■■□□ 2.6
CHRNA1P02708 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CHRNA1P02708 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CHRNA1P02708 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.26■■■□□ 2.59
CHRNA1P02708 SUZ12P1-203ENST00000578195 985 ntBASIC31.26■■■□□ 2.59
CHRNA1P02708 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.25■■■□□ 2.59
CHRNA1P02708 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.24■■■□□ 2.59
CHRNA1P02708 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CHRNA1P02708 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.2■■■□□ 2.59
CHRNA1P02708 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.2■■■□□ 2.59
CHRNA1P02708 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CHRNA1P02708 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CHRNA1P02708 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.18■■■□□ 2.58
CHRNA1P02708 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CHRNA1P02708 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CHRNA1P02708 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CHRNA1P02708 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CHRNA1P02708 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CHRNA1P02708 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CHRNA1P02708 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.08■■■□□ 2.57
CHRNA1P02708 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CHRNA1P02708 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.06■■■□□ 2.56
CHRNA1P02708 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CHRNA1P02708 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.56
CHRNA1P02708 CAHM-201ENST00000604200 896 ntBASIC31.01■■■□□ 2.55
CHRNA1P02708 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CHRNA1P02708 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CHRNA1P02708 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CHRNA1P02708 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CHRNA1P02708 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.96■■■□□ 2.55
CHRNA1P02708 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
CHRNA1P02708 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CHRNA1P02708 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CHRNA1P02708 RPS2P35-201ENST00000443417 897 ntBASIC30.95■■■□□ 2.55
CHRNA1P02708 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CHRNA1P02708 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms