Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
MSH6P52701 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC22.04■■□□□ 1.12
MSH6P52701 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH6P52701 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH6P52701 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH6P52701 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH6P52701 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 MPV17-204ENST00000399052 749 ntTSL 4 BASIC22.03■■□□□ 1.12
MSH6P52701 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 HLA-DQB2-229ENST00000411527 1059 ntBASIC22.03■■□□□ 1.12
MSH6P52701 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH6P52701 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH6P52701 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH6P52701 MAGEA5-201ENST00000446757 942 ntBASIC22.03■■□□□ 1.12
MSH6P52701 RN7SL720P-201ENST00000488178 304 ntBASIC22.03■■□□□ 1.12
MSH6P52701 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC22.03■■□□□ 1.12
MSH6P52701 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH6P52701 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH6P52701 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
MSH6P52701 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH6P52701 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH6P52701 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
MSH6P52701 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH6P52701 AC026410.3-201ENST00000514280 936 ntBASIC22.02■■□□□ 1.12
MSH6P52701 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH6P52701 NKG7-204ENST00000595217 816 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH6P52701 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC22.02■■□□□ 1.12
MSH6P52701 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
MSH6P52701 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
MSH6P52701 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH6P52701 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
MSH6P52701 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
MSH6P52701 AC141586.5-201ENST00000624546 2050 ntBASIC22.02■■□□□ 1.11
MSH6P52701 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
MSH6P52701 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
MSH6P52701 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 PGGT1BP2-201ENST00000398621 1028 ntBASIC22.01■■□□□ 1.11
MSH6P52701 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 POM121L10P-201ENST00000436994 1285 ntBASIC22.01■■□□□ 1.11
MSH6P52701 AL590640.2-201ENST00000457038 527 ntBASIC22.01■■□□□ 1.11
MSH6P52701 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH6P52701 CU633904.3-201ENST00000624042 1029 ntBASIC22.01■■□□□ 1.11
MSH6P52701 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH6P52701 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 AL645728.1-201ENST00000366221 2101 ntBASIC22.01■■□□□ 1.11
MSH6P52701 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH6P52701 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
MSH6P52701 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms