RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 DCAF8L2P0C7V8 631 aa33.33■■■□□ 2.93
CLIP2-202ENST00000361545 NISCHQ9Y2I1 1504 aa31.71■■■□□ 2.67
CLIP2-202ENST00000361545 SUPT5HO00267 1087 aaKnown RBP31.23■■■□□ 2.59
CLIP2-202ENST00000361545 SHROOM4Q9ULL8 1493 aa30.88■■■□□ 2.53
CLIP2-202ENST00000361545 EHMT2Q96KQ7 1210 aa30.33■■■□□ 2.45
CLIP2-202ENST00000361545 FAM9AQ8IZU1 332 aaPredicted RBP29.5■■■□□ 2.31
CLIP2-202ENST00000361545 APLP2Q06481 763 aa29.47■■■□□ 2.31
CLIP2-202ENST00000361545 TTBK1Q5TCY1 1321 aaPredicted RBP29.19■■■□□ 2.26
CLIP2-202ENST00000361545 RANGAP1P46060 587 aaPredicted RBP29.11■■■□□ 2.25
CLIP2-202ENST00000361545 TRIM41Q8WV44 630 aa28.87■■■□□ 2.21
CLIP2-202ENST00000361545 ATP1B4Q9UN42 357 aaPredicted RBP28.8■■■□□ 2.2
CLIP2-202ENST00000361545 PCGF6Q9BYE7 350 aa28.62■■■□□ 2.17
CLIP2-202ENST00000361545 UBTFP17480 764 aaKnown RBP28.59■■■□□ 2.17
CLIP2-202ENST00000361545 PELP1Q8IZL8 1130 aaKnown RBP28.36■■■□□ 2.13
CLIP2-202ENST00000361545 CCER1Q8TC90 406 aaPredicted RBP28.21■■■□□ 2.11
CLIP2-202ENST00000361545 PPARGC1BQ86YN6 1023 aaKnown RBP28.06■■■□□ 2.08
CLIP2-202ENST00000361545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.88■■■□□ 2.05
CLIP2-202ENST00000361545 HNRNPUL2Q1KMD3 747 aaKnown RBP27.88■■■□□ 2.05
CLIP2-202ENST00000361545 ABCC9O60706 1549 aa27.86■■■□□ 2.05
CLIP2-202ENST00000361545 ZEB1P37275 1124 aaPredicted RBP27.85■■■□□ 2.05
CLIP2-202ENST00000361545 MYT1LQ9UL68 1186 aa27.79■■■□□ 2.04
CLIP2-202ENST00000361545 PABPN1Q86U42 306 aaKnown RBP eCLIP27.79■■■□□ 2.04
CLIP2-202ENST00000361545 ITGAEP38570 1179 aa27.7■■■□□ 2.02
CLIP2-202ENST00000361545 CENPBP07199 599 aaPredicted RBP27.61■■■□□ 2.01
CLIP2-202ENST00000361545 LOC105371045A0A1W2PR82 267 aa27.56■■■□□ 2
CLIP2-202ENST00000361545 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
CLIP2-202ENST00000361545 YTHDC1Q96MU7 727 aaKnown RBP27.44■■□□□ 1.98
CLIP2-202ENST00000361545 TRIM26Q12899 539 aaPredicted RBP27.38■■□□□ 1.97
CLIP2-202ENST00000361545 POLR3GLQ9BT43 218 aa27.33■■□□□ 1.97
CLIP2-202ENST00000361545 ERICH6Q7L0X2 663 aa27.25■■□□□ 1.95
CLIP2-202ENST00000361545 NEFLP07196 543 aa27.23■■□□□ 1.95
CLIP2-202ENST00000361545 CNGB1Q14028 1251 aaPredicted RBP27.11■■□□□ 1.93
CLIP2-202ENST00000361545 FBLN2P98095 1184 aa27.05■■□□□ 1.92
CLIP2-202ENST00000361545 FAM50AQ14320 339 aaKnown RBP26.98■■□□□ 1.91
CLIP2-202ENST00000361545 MYT1Q01538 1121 aa26.94■■□□□ 1.9
CLIP2-202ENST00000361545 SLC4A1APQ9BWU0 796 aaKnown RBP26.91■■□□□ 1.9
CLIP2-202ENST00000361545 HRCP23327 699 aa26.85■■□□□ 1.89
CLIP2-202ENST00000361545 TRIM52Q96A61 297 aa26.81■■□□□ 1.88
CLIP2-202ENST00000361545 ARID3CA6NKF2 412 aa26.66■■□□□ 1.86
CLIP2-202ENST00000361545 P3H3Q8IVL6 736 aa26.64■■□□□ 1.85
CLIP2-202ENST00000361545 NEUROD1Q13562 356 aa26.61■■□□□ 1.85
CLIP2-202ENST00000361545 ZNF326Q5BKZ1 582 aaKnown RBP26.52■■□□□ 1.84
CLIP2-202ENST00000361545 SCRIBQ14160 1630 aa26.51■■□□□ 1.83
CLIP2-202ENST00000361545 CSRNP3Q8WYN3 585 aa26.41■■□□□ 1.82
CLIP2-202ENST00000361545 DAXXQ9UER7 740 aaPredicted RBP26.39■■□□□ 1.81
CLIP2-202ENST00000361545 ZNF777Q9ULD5 760 aaPredicted RBP26.34■■□□□ 1.81
CLIP2-202ENST00000361545 DIEXFQ68CQ4 756 aaKnown RBP26.31■■□□□ 1.8
CLIP2-202ENST00000361545 BCANQ96GW7 911 aa26.26■■□□□ 1.79
CLIP2-202ENST00000361545 ZCCHC6Q5VYS8 1495 aaKnown RBP26.15■■□□□ 1.78
CLIP2-202ENST00000361545 CDK11AQ9UQ88 783 aaPredicted RBP26.15■■□□□ 1.78
CLIP2-202ENST00000361545 CLSPNQ9HAW4 1339 aa26.12■■□□□ 1.77
CLIP2-202ENST00000361545 NPM1P06748 294 aaKnown RBP eCLIP26.02■■□□□ 1.76
CLIP2-202ENST00000361545 PLPPR3Q6T4P5 718 aa26.02■■□□□ 1.76
CLIP2-202ENST00000361545 ESF1Q9H501 851 aaKnown RBP26.01■■□□□ 1.76
CLIP2-202ENST00000361545 ANP32CO43423 234 aa26.01■■□□□ 1.75
CLIP2-202ENST00000361545 SLC24A1O60721 1099 aa25.98■■□□□ 1.75
CLIP2-202ENST00000361545 CHGAP10645 457 aaKnown RBP25.91■■□□□ 1.74
CLIP2-202ENST00000361545 CCDC180Q9P1Z9 1646 aa25.85■■□□□ 1.73
CLIP2-202ENST00000361545 STAG3Q9UJ98 1225 aa25.85■■□□□ 1.73
CLIP2-202ENST00000361545 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
CLIP2-202ENST00000361545 BCL11AQ9H165 835 aa25.8■■□□□ 1.72
CLIP2-202ENST00000361545 ZNF316A6NFI3 1004 aaPredicted RBP25.79■■□□□ 1.72
CLIP2-202ENST00000361545 CHIC2Q9UKJ5 165 aa25.78■■□□□ 1.72
CLIP2-202ENST00000361545 NEFMP07197 916 aa25.77■■□□□ 1.72
CLIP2-202ENST00000361545 RB1CC1Q8TDY2 1594 aa25.77■■□□□ 1.72
CLIP2-202ENST00000361545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.74■■□□□ 1.712e-6■■■□□ 16.4
CLIP2-202ENST00000361545 ZBTB47Q9UFB7 747 aaPredicted RBP25.73■■□□□ 1.71
CLIP2-202ENST00000361545 CANXP27824 592 aaKnown RBP25.7■■□□□ 1.71
CLIP2-202ENST00000361545 TONSLQ96HA7 1378 aa25.63■■□□□ 1.69
CLIP2-202ENST00000361545 TSPY4P0CV99 314 aa25.58■■□□□ 1.69
CLIP2-202ENST00000361545 TSPY10P0CW01 314 aa25.58■■□□□ 1.69
CLIP2-202ENST00000361545 MTUS2Q5JR59 1369 aa25.56■■□□□ 1.68
CLIP2-202ENST00000361545 KCNH8Q96L42 1107 aa25.54■■□□□ 1.68
CLIP2-202ENST00000361545 RTL5Q5HYW3 569 aaPredicted RBP25.53■■□□□ 1.68
CLIP2-202ENST00000361545 GTF3C3Q9Y5Q9 886 aa25.49■■□□□ 1.67
CLIP2-202ENST00000361545 KDM2AQ9Y2K7 1162 aa25.45■■□□□ 1.66
CLIP2-202ENST00000361545 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
CLIP2-202ENST00000361545 BAZ1BQ9UIG0 1483 aaKnown RBP25.43■■□□□ 1.66
CLIP2-202ENST00000361545 SENP3Q9H4L4 574 aaPredicted RBP25.42■■□□□ 1.66
CLIP2-202ENST00000361545 CLIP1P30622 1438 aa25.4■■□□□ 1.66
CLIP2-202ENST00000361545 NACADO15069 1562 aa25.4■■□□□ 1.66
CLIP2-202ENST00000361545 DDX10Q13206 875 aaKnown RBP25.36■■□□□ 1.65
CLIP2-202ENST00000361545 PLEKHD1A6NEE1 506 aa25.34■■□□□ 1.65
CLIP2-202ENST00000361545 RRP7BPQ9NSQ0 103 aa25.34■■□□□ 1.65
CLIP2-202ENST00000361545 SALL2Q9Y467 1007 aaPredicted RBP25.31■■□□□ 1.64
CLIP2-202ENST00000361545 FAM9BQ8IZU0 186 aa25.3■■□□□ 1.64
CLIP2-202ENST00000361545 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
CLIP2-202ENST00000361545 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
CLIP2-202ENST00000361545 SCAF1Q9H7N4 1312 aaKnown RBP25.27■■□□□ 1.64
CLIP2-202ENST00000361545 DCAF1Q9Y4B6 1507 aa25.22■■□□□ 1.63
CLIP2-202ENST00000361545 HNRNPUQ00839 825 aaKnown RBP eCLIP25.22■■□□□ 1.63
CLIP2-202ENST00000361545 PLEKHG5O94827 1062 aa25.2■■□□□ 1.63
CLIP2-202ENST00000361545 PPP1R15AO75807 674 aaPredicted RBP25.19■■□□□ 1.62
CLIP2-202ENST00000361545 ARID4BQ4LE39 1312 aaPredicted RBP25.18■■□□□ 1.62
CLIP2-202ENST00000361545 HIRIP3Q9BW71 556 aaPredicted RBP25.18■■□□□ 1.62
CLIP2-202ENST00000361545 GOLGA3Q08378 1498 aa25.16■■□□□ 1.62
CLIP2-202ENST00000361545 KIF27Q86VH2 1401 aa25.16■■□□□ 1.62
CLIP2-202ENST00000361545 TMC1Q8TDI8 760 aa25.16■■□□□ 1.62
CLIP2-202ENST00000361545 CFDP1Q9UEE9 299 aaPredicted RBP25.13■■□□□ 1.61
CLIP2-202ENST00000361545 RGL3Q3MIN7 710 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms