RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 DCAF8L2P0C7V8 631 aa33.06■■■□□ 2.88
PCDH1-201ENST00000287008 NISCHQ9Y2I1 1504 aa31.56■■■□□ 2.64
PCDH1-201ENST00000287008 SUPT5HO00267 1087 aaKnown RBP30.93■■■□□ 2.54
PCDH1-201ENST00000287008 SHROOM4Q9ULL8 1493 aa30.45■■■□□ 2.47
PCDH1-201ENST00000287008 EHMT2Q96KQ7 1210 aa29.79■■■□□ 2.36
PCDH1-201ENST00000287008 APLP2Q06481 763 aa29.44■■■□□ 2.3
PCDH1-201ENST00000287008 FAM9AQ8IZU1 332 aaPredicted RBP29.29■■■□□ 2.28
PCDH1-201ENST00000287008 TRIM41Q8WV44 630 aa28.71■■■□□ 2.19
PCDH1-201ENST00000287008 RANGAP1P46060 587 aaPredicted RBP28.7■■■□□ 2.19
PCDH1-201ENST00000287008 TTBK1Q5TCY1 1321 aaPredicted RBP28.7■■■□□ 2.18
PCDH1-201ENST00000287008 ATP1B4Q9UN42 357 aaPredicted RBP28.55■■■□□ 2.16
PCDH1-201ENST00000287008 UBTFP17480 764 aaKnown RBP28.43■■■□□ 2.14
PCDH1-201ENST00000287008 PELP1Q8IZL8 1130 aaKnown RBP28.41■■■□□ 2.14
PCDH1-201ENST00000287008 PCGF6Q9BYE7 350 aa28.31■■■□□ 2.12
PCDH1-201ENST00000287008 CCER1Q8TC90 406 aaPredicted RBP28■■■□□ 2.07
PCDH1-201ENST00000287008 ZEB1P37275 1124 aaPredicted RBP27.84■■■□□ 2.05
PCDH1-201ENST00000287008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.72■■■□□ 2.03
PCDH1-201ENST00000287008 HNRNPUL2Q1KMD3 747 aaKnown RBP27.72■■■□□ 2.03
PCDH1-201ENST00000287008 ABCC9O60706 1549 aa27.64■■■□□ 2.02
PCDH1-201ENST00000287008 MYT1LQ9UL68 1186 aa27.64■■■□□ 2.02
PCDH1-201ENST00000287008 PPARGC1BQ86YN6 1023 aaKnown RBP27.57■■■□□ 2
PCDH1-201ENST00000287008 CENPBP07199 599 aaPredicted RBP27.53■■■□□ 2
PCDH1-201ENST00000287008 PABPN1Q86U42 306 aaKnown RBP eCLIP27.52■■■□□ 2
PCDH1-201ENST00000287008 ITGAEP38570 1179 aa27.4■■□□□ 1.98
PCDH1-201ENST00000287008 CHIC1Q5VXU3 224 aa27.28■■□□□ 1.96
PCDH1-201ENST00000287008 TRIM26Q12899 539 aaPredicted RBP27.22■■□□□ 1.95
PCDH1-201ENST00000287008 LOC105371045A0A1W2PR82 267 aa27.19■■□□□ 1.94
PCDH1-201ENST00000287008 NEFLP07196 543 aa27.17■■□□□ 1.94
PCDH1-201ENST00000287008 ERICH6Q7L0X2 663 aa27.09■■□□□ 1.93
PCDH1-201ENST00000287008 POLR3GLQ9BT43 218 aa27.06■■□□□ 1.92
PCDH1-201ENST00000287008 YTHDC1Q96MU7 727 aaKnown RBP27.01■■□□□ 1.91
PCDH1-201ENST00000287008 FBLN2P98095 1184 aa26.86■■□□□ 1.89
PCDH1-201ENST00000287008 FAM50AQ14320 339 aaKnown RBP26.77■■□□□ 1.88
PCDH1-201ENST00000287008 CNGB1Q14028 1251 aaPredicted RBP26.7■■□□□ 1.87
PCDH1-201ENST00000287008 SLC4A1APQ9BWU0 796 aaKnown RBP26.69■■□□□ 1.86
PCDH1-201ENST00000287008 TRIM52Q96A61 297 aa26.63■■□□□ 1.85
PCDH1-201ENST00000287008 HRCP23327 699 aa26.62■■□□□ 1.85
PCDH1-201ENST00000287008 CSRNP3Q8WYN3 585 aa26.36■■□□□ 1.81
PCDH1-201ENST00000287008 P3H3Q8IVL6 736 aa26.35■■□□□ 1.81
PCDH1-201ENST00000287008 NEUROD1Q13562 356 aa26.33■■□□□ 1.8
PCDH1-201ENST00000287008 SCRIBQ14160 1630 aa26.31■■□□□ 1.8
PCDH1-201ENST00000287008 DAXXQ9UER7 740 aaPredicted RBP26.31■■□□□ 1.8
PCDH1-201ENST00000287008 ARID3CA6NKF2 412 aa26.3■■□□□ 1.8
PCDH1-201ENST00000287008 ZNF326Q5BKZ1 582 aaKnown RBP26.27■■□□□ 1.8
PCDH1-201ENST00000287008 CDK11AQ9UQ88 783 aaPredicted RBP26.23■■□□□ 1.79
PCDH1-201ENST00000287008 ZNF777Q9ULD5 760 aaPredicted RBP26.14■■□□□ 1.77
PCDH1-201ENST00000287008 BCANQ96GW7 911 aa26.1■■□□□ 1.77
PCDH1-201ENST00000287008 DIEXFQ68CQ4 756 aaKnown RBP26.08■■□□□ 1.77
PCDH1-201ENST00000287008 NPM1P06748 294 aaKnown RBP eCLIP26.08■■□□□ 1.77
PCDH1-201ENST00000287008 ESF1Q9H501 851 aaKnown RBP26.03■■□□□ 1.76
PCDH1-201ENST00000287008 ZCCHC6Q5VYS8 1495 aaKnown RBP26■■□□□ 1.75
PCDH1-201ENST00000287008 CLSPNQ9HAW4 1339 aa26■■□□□ 1.75
PCDH1-201ENST00000287008 ANP32CO43423 234 aa25.9■■□□□ 1.74
PCDH1-201ENST00000287008 NEFMP07197 916 aa25.81■■□□□ 1.72
PCDH1-201ENST00000287008 STAG3Q9UJ98 1225 aa25.78■■□□□ 1.72
PCDH1-201ENST00000287008 CHMP7Q8WUX9 453 aaPredicted RBP25.77■■□□□ 1.72
PCDH1-201ENST00000287008 SLC24A1O60721 1099 aa25.76■■□□□ 1.71
PCDH1-201ENST00000287008 CHGAP10645 457 aaKnown RBP25.75■■□□□ 1.71
PCDH1-201ENST00000287008 CCDC180Q9P1Z9 1646 aa25.73■■□□□ 1.71
PCDH1-201ENST00000287008 ZBTB47Q9UFB7 747 aaPredicted RBP25.72■■□□□ 1.71
PCDH1-201ENST00000287008 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
PCDH1-201ENST00000287008 PLPPR3Q6T4P5 718 aa25.67■■□□□ 1.7
PCDH1-201ENST00000287008 ZNF316A6NFI3 1004 aaPredicted RBP25.65■■□□□ 1.7
PCDH1-201ENST00000287008 TSPY4P0CV99 314 aa25.6■■□□□ 1.69
PCDH1-201ENST00000287008 TSPY10P0CW01 314 aa25.6■■□□□ 1.69
PCDH1-201ENST00000287008 CANXP27824 592 aaKnown RBP25.56■■□□□ 1.68
PCDH1-201ENST00000287008 TONSLQ96HA7 1378 aa25.53■■□□□ 1.68
PCDH1-201ENST00000287008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.53■■□□□ 1.68
PCDH1-201ENST00000287008 CHIC2Q9UKJ5 165 aa25.53■■□□□ 1.68
PCDH1-201ENST00000287008 MTUS2Q5JR59 1369 aa25.5■■□□□ 1.67
PCDH1-201ENST00000287008 RTL5Q5HYW3 569 aaPredicted RBP25.43■■□□□ 1.66
PCDH1-201ENST00000287008 MYT1Q01538 1121 aa25.43■■□□□ 1.66
PCDH1-201ENST00000287008 BCL11AQ9H165 835 aa25.43■■□□□ 1.66
PCDH1-201ENST00000287008 NACADO15069 1562 aa25.37■■□□□ 1.65
PCDH1-201ENST00000287008 KCNH8Q96L42 1107 aa25.35■■□□□ 1.65
PCDH1-201ENST00000287008 PLEKHD1A6NEE1 506 aa25.34■■□□□ 1.65
PCDH1-201ENST00000287008 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
PCDH1-201ENST00000287008 CLIP1P30622 1438 aa25.29■■□□□ 1.64
PCDH1-201ENST00000287008 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
PCDH1-201ENST00000287008 KDM2AQ9Y2K7 1162 aa25.22■■□□□ 1.63
PCDH1-201ENST00000287008 EEA1Q15075 1411 aa25.2■■□□□ 1.62
PCDH1-201ENST00000287008 WRNQ14191 1432 aaPredicted RBP eCLIP25.19■■□□□ 1.62
PCDH1-201ENST00000287008 GTF3C3Q9Y5Q9 886 aa25.17■■□□□ 1.62
PCDH1-201ENST00000287008 ERCC6Q03468 1493 aa25.16■■□□□ 1.62
PCDH1-201ENST00000287008 DDX10Q13206 875 aaKnown RBP25.14■■□□□ 1.62
PCDH1-201ENST00000287008 RRP7BPQ9NSQ0 103 aa25.13■■□□□ 1.61
PCDH1-201ENST00000287008 KIF27Q86VH2 1401 aa25.13■■□□□ 1.61
PCDH1-201ENST00000287008 PPP1R15AO75807 674 aaPredicted RBP25.12■■□□□ 1.61
PCDH1-201ENST00000287008 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
PCDH1-201ENST00000287008 TMC1Q8TDI8 760 aa25.07■■□□□ 1.6
PCDH1-201ENST00000287008 CFDP1Q9UEE9 299 aaPredicted RBP25.07■■□□□ 1.6
PCDH1-201ENST00000287008 ARID4BQ4LE39 1312 aaPredicted RBP25.05■■□□□ 1.6
PCDH1-201ENST00000287008 FAM9BQ8IZU0 186 aa25.05■■□□□ 1.6
PCDH1-201ENST00000287008 SCAF1Q9H7N4 1312 aaKnown RBP25.05■■□□□ 1.6
PCDH1-201ENST00000287008 GOLGA3Q08378 1498 aa25.05■■□□□ 1.6
PCDH1-201ENST00000287008 HNRNPUQ00839 825 aaKnown RBP eCLIP25.04■■□□□ 1.6
PCDH1-201ENST00000287008 SALL2Q9Y467 1007 aaPredicted RBP25.01■■□□□ 1.59
PCDH1-201ENST00000287008 ACIN1Q9UKV3 1341 aaKnown RBP24.98■■□□□ 1.59
PCDH1-201ENST00000287008 C14orf37Q86TY3 774 aa24.98■■□□□ 1.59
PCDH1-201ENST00000287008 WDR43Q15061 677 aaKnown RBP eCLIP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms