RNA–Protein interactions for RNA: ENST00000535977.5

RAB40C-203, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RAB40C, Length 2,717 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-203ENST00000535977 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
RAB40C-203ENST00000535977 CCDC180Q9P1Z9 1646 aa32.12■■■□□ 2.73
RAB40C-203ENST00000535977 ZCCHC6Q5VYS8 1495 aaKnown RBP31.66■■■□□ 2.66
RAB40C-203ENST00000535977 SHROOM4Q9ULL8 1493 aa31.34■■■□□ 2.61
RAB40C-203ENST00000535977 DCAF1Q9Y4B6 1507 aa30.98■■■□□ 2.55
RAB40C-203ENST00000535977 SUPT5HO00267 1087 aaKnown RBP30.73■■■□□ 2.51
RAB40C-203ENST00000535977 DCAF8L2P0C7V8 631 aa30.73■■■□□ 2.51
RAB40C-203ENST00000535977 ABCC9O60706 1549 aa30.43■■■□□ 2.46
RAB40C-203ENST00000535977 MYO15BQ96JP2 1530 aa30.22■■■□□ 2.43
RAB40C-203ENST00000535977 CHIC1Q5VXU3 224 aa29.96■■■□□ 2.39
RAB40C-203ENST00000535977 HRCP23327 699 aa29.78■■■□□ 2.36
RAB40C-203ENST00000535977 NACADO15069 1562 aa29.73■■■□□ 2.35
RAB40C-203ENST00000535977 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
RAB40C-203ENST00000535977 RSF1Q96T23 1441 aaPredicted RBP29.49■■■□□ 2.31
RAB40C-203ENST00000535977 PELP1Q8IZL8 1130 aaKnown RBP29.29■■■□□ 2.28
RAB40C-203ENST00000535977 RB1CC1Q8TDY2 1594 aa29.24■■■□□ 2.27
RAB40C-203ENST00000535977 PPARGC1BQ86YN6 1023 aaKnown RBP29.15■■■□□ 2.26
RAB40C-203ENST00000535977 CECR2Q9BXF3 1484 aa29.02■■■□□ 2.24
RAB40C-203ENST00000535977 MROH2BQ7Z745 1585 aa28.98■■■□□ 2.23
RAB40C-203ENST00000535977 PCGF6Q9BYE7 350 aa28.95■■■□□ 2.22
RAB40C-203ENST00000535977 LOC105371045A0A1W2PR82 267 aa28.86■■■□□ 2.21
RAB40C-203ENST00000535977 BAZ1AQ9NRL2 1556 aaPredicted RBP28.85■■■□□ 2.21
RAB40C-203ENST00000535977 TRIM41Q8WV44 630 aa28.84■■■□□ 2.21
RAB40C-203ENST00000535977 WIZO95785 1651 aa28.78■■■□□ 2.2
RAB40C-203ENST00000535977 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.18
RAB40C-203ENST00000535977 UNC13AQ9UPW8 1703 aa28.6■■■□□ 2.17
RAB40C-203ENST00000535977 SMARCA4P51532 1647 aa28.55■■■□□ 2.16
RAB40C-203ENST00000535977 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
RAB40C-203ENST00000535977 TRIM26Q12899 539 aaPredicted RBP28.45■■■□□ 2.14
RAB40C-203ENST00000535977 EIF4G1Q04637 1599 aaKnown RBP28.42■■■□□ 2.14
RAB40C-203ENST00000535977 SCAF1Q9H7N4 1312 aaKnown RBP28.41■■■□□ 2.14
RAB40C-203ENST00000535977 BICRAQ9NZM4 1560 aa28.34■■■□□ 2.13
RAB40C-203ENST00000535977 FAM9AQ8IZU1 332 aaPredicted RBP28.31■■■□□ 2.12
RAB40C-203ENST00000535977 CCDC88BA6NC98 1476 aa28.28■■■□□ 2.12
RAB40C-203ENST00000535977 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
RAB40C-203ENST00000535977 MYT1Q01538 1121 aa28.26■■■□□ 2.11
RAB40C-203ENST00000535977 PEG3Q9GZU2 1588 aa28.16■■■□□ 2.1
RAB40C-203ENST00000535977 ABCC8Q09428 1581 aa27.98■■■□□ 2.07
RAB40C-203ENST00000535977 EEA1Q15075 1411 aa27.94■■■□□ 2.06
RAB40C-203ENST00000535977 ZEB1P37275 1124 aaPredicted RBP27.92■■■□□ 2.06
RAB40C-203ENST00000535977 EHMT2Q96KQ7 1210 aa27.86■■■□□ 2.05
RAB40C-203ENST00000535977 ATAD2BQ9ULI0 1458 aa27.86■■■□□ 2.05
RAB40C-203ENST00000535977 BAZ1BQ9UIG0 1483 aaKnown RBP27.77■■■□□ 2.04
RAB40C-203ENST00000535977 WRNQ14191 1432 aaPredicted RBP eCLIP27.74■■■□□ 2.03
RAB40C-203ENST00000535977 SOGA1O94964 1423 aa27.72■■■□□ 2.03
RAB40C-203ENST00000535977 TNIKQ9UKE5 1360 aa27.72■■■□□ 2.03
RAB40C-203ENST00000535977 CSRNP3Q8WYN3 585 aa27.71■■■□□ 2.03
RAB40C-203ENST00000535977 DNAJC5BQ9UF47 199 aa27.63■■■□□ 2.01
RAB40C-203ENST00000535977 CEP162Q5TB80 1403 aa27.6■■■□□ 2.01
RAB40C-203ENST00000535977 ACIN1Q9UKV3 1341 aaKnown RBP27.57■■■□□ 2
RAB40C-203ENST00000535977 GOLGA3Q08378 1498 aa27.56■■■□□ 2
RAB40C-203ENST00000535977 RUSC2Q8N2Y8 1516 aa27.53■■■□□ 2
RAB40C-203ENST00000535977 SYNJ1O43426 1573 aa27.51■■■□□ 2
RAB40C-203ENST00000535977 NEUROD1Q13562 356 aa27.48■■□□□ 1.99
RAB40C-203ENST00000535977 HMGXB3Q12766 1538 aa27.47■■□□□ 1.99
RAB40C-203ENST00000535977 UBTFP17480 764 aaKnown RBP27.47■■□□□ 1.99
RAB40C-203ENST00000535977 NCAPD3P42695 1498 aa27.46■■□□□ 1.99
RAB40C-203ENST00000535977 CEP164Q9UPV0 1460 aa27.46■■□□□ 1.99
RAB40C-203ENST00000535977 KIF21BO75037 1637 aa27.44■■□□□ 1.98
RAB40C-203ENST00000535977 CC2D2AQ9P2K1 1620 aa27.38■■□□□ 1.97
RAB40C-203ENST00000535977 GTF3C3Q9Y5Q9 886 aa27.36■■□□□ 1.97
RAB40C-203ENST00000535977 TOP2BQ02880 1626 aa27.35■■□□□ 1.97
RAB40C-203ENST00000535977 BIVM-ERCC5R4GMW8 1640 aa27.28■■□□□ 1.96
RAB40C-203ENST00000535977 CLIP1P30622 1438 aa27.17■■□□□ 1.94
RAB40C-203ENST00000535977 CCER1Q8TC90 406 aaPredicted RBP27.15■■□□□ 1.94
RAB40C-203ENST00000535977 CFTRP13569 1480 aa27.13■■□□□ 1.93
RAB40C-203ENST00000535977 CENPBP07199 599 aaPredicted RBP27.12■■□□□ 1.93
RAB40C-203ENST00000535977 RAPGEF2Q9Y4G8 1499 aa27.1■■□□□ 1.93
RAB40C-203ENST00000535977 ERICH3Q5RHP9 1530 aa27.08■■□□□ 1.93
RAB40C-203ENST00000535977 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.08■■□□□ 1.93
RAB40C-203ENST00000535977 VPS8Q8N3P4 1428 aa27.07■■□□□ 1.92
RAB40C-203ENST00000535977 CUX1P39880 1505 aa27.02■■□□□ 1.92
RAB40C-203ENST00000535977 PRXQ9BXM0 1461 aa27.02■■□□□ 1.92
RAB40C-203ENST00000535977 PRDM2Q13029 1718 aa26.98■■□□□ 1.91
RAB40C-203ENST00000535977 KIF27Q86VH2 1401 aa26.97■■□□□ 1.91
RAB40C-203ENST00000535977 TTBK1Q5TCY1 1321 aaPredicted RBP26.96■■□□□ 1.91
RAB40C-203ENST00000535977 APLP2Q06481 763 aa26.96■■□□□ 1.91
RAB40C-203ENST00000535977 DIEXFQ68CQ4 756 aaKnown RBP26.87■■□□□ 1.89
RAB40C-203ENST00000535977 CADPSQ9ULU8 1353 aa26.85■■□□□ 1.89
RAB40C-203ENST00000535977 ARAP1Q96P48 1450 aa26.72■■□□□ 1.87
RAB40C-203ENST00000535977 RANGAP1P46060 587 aaPredicted RBP26.66■■□□□ 1.86
RAB40C-203ENST00000535977 CUX2O14529 1486 aa26.63■■□□□ 1.85
RAB40C-203ENST00000535977 IGF1RP08069 1367 aa26.62■■□□□ 1.85
RAB40C-203ENST00000535977 HNRNPUL2Q1KMD3 747 aaKnown RBP26.61■■□□□ 1.85
RAB40C-203ENST00000535977 FGD5Q6ZNL6 1462 aa26.57■■□□□ 1.84
RAB40C-203ENST00000535977 FANCD2Q9BXW9 1451 aa26.54■■□□□ 1.84
RAB40C-203ENST00000535977 ARHGAP35Q9NRY4 1499 aa26.54■■□□□ 1.84
RAB40C-203ENST00000535977 CARMIL1Q5VZK9 1371 aa26.52■■□□□ 1.84
RAB40C-203ENST00000535977 NESP48681 1621 aa26.48■■□□□ 1.83
RAB40C-203ENST00000535977 YTHDC1Q96MU7 727 aaKnown RBP26.48■■□□□ 1.83
RAB40C-203ENST00000535977 CLSPNQ9HAW4 1339 aa26.47■■□□□ 1.83
RAB40C-203ENST00000535977 DNMBPQ6XZF7 1577 aa26.46■■□□□ 1.83
RAB40C-203ENST00000535977 ZNF316A6NFI3 1004 aaPredicted RBP26.45■■□□□ 1.83
RAB40C-203ENST00000535977 BCL11AQ9H165 835 aa26.45■■□□□ 1.82
RAB40C-203ENST00000535977 RRBP1Q9P2E9 1410 aaKnown RBP26.45■■□□□ 1.82
RAB40C-203ENST00000535977 MAP3K1Q13233 1512 aa26.44■■□□□ 1.82
RAB40C-203ENST00000535977 KANK4Q5T7N3 995 aaPredicted RBP26.43■■□□□ 1.82
RAB40C-203ENST00000535977 ABCA10Q8WWZ4 1543 aa26.38■■□□□ 1.81
RAB40C-203ENST00000535977 TOPBP1Q92547 1522 aa26.35■■□□□ 1.81
RAB40C-203ENST00000535977 LAMC3Q9Y6N6 1575 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 152 ms