Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 AL135999.2-201ENST00000622438 1686 ntBASIC13.4□□□□□ -0.26
CDX1P47902 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CDX1P47902 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CDX1P47902 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.4□□□□□ -0.26
CDX1P47902 AP002414.1-201ENST00000391405 1147 ntBASIC13.4□□□□□ -0.26
CDX1P47902 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.4□□□□□ -0.26
CDX1P47902 AC108751.1-201ENST00000490852 363 ntBASIC13.4□□□□□ -0.26
CDX1P47902 IGHV3-65-201ENST00000523210 341 ntBASIC13.4□□□□□ -0.26
CDX1P47902 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.4□□□□□ -0.26
CDX1P47902 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CDX1P47902 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.4□□□□□ -0.26
CDX1P47902 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.4□□□□□ -0.26
CDX1P47902 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
CDX1P47902 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CDX1P47902 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CDX1P47902 AC073347.1-201ENST00000421633 2643 ntBASIC13.4□□□□□ -0.26
CDX1P47902 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CDX1P47902 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.4□□□□□ -0.27
CDX1P47902 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.4□□□□□ -0.27
CDX1P47902 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
CDX1P47902 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.39□□□□□ -0.27
CDX1P47902 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CDX1P47902 MED15P5-201ENST00000423150 992 ntBASIC13.39□□□□□ -0.27
CDX1P47902 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.39□□□□□ -0.27
CDX1P47902 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.39□□□□□ -0.27
CDX1P47902 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 AC023908.3-201ENST00000564211 3047 ntBASIC13.39□□□□□ -0.27
CDX1P47902 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.39□□□□□ -0.27
CDX1P47902 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.39□□□□□ -0.27
CDX1P47902 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.39□□□□□ -0.27
CDX1P47902 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CDX1P47902 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms