RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 NISCHQ9Y2I1 1504 aa35.82■■■■□ 3.32
LITAF-201ENST00000339430 CCDC180Q9P1Z9 1646 aa31.28■■■□□ 2.6
LITAF-201ENST00000339430 ZCCHC6Q5VYS8 1495 aaKnown RBP30.04■■■□□ 2.4
LITAF-201ENST00000339430 ABCC9O60706 1549 aa29.86■■■□□ 2.37
LITAF-201ENST00000339430 DCAF8L2P0C7V8 631 aa29.78■■■□□ 2.36
LITAF-201ENST00000339430 DCAF1Q9Y4B6 1507 aa29.56■■■□□ 2.32
LITAF-201ENST00000339430 MYO15BQ96JP2 1530 aa29.27■■■□□ 2.28
LITAF-201ENST00000339430 NACADO15069 1562 aa29.2■■■□□ 2.26
LITAF-201ENST00000339430 SHROOM4Q9ULL8 1493 aa29.19■■■□□ 2.26
LITAF-201ENST00000339430 RB1CC1Q8TDY2 1594 aa29■■■□□ 2.23
LITAF-201ENST00000339430 SCRIBQ14160 1630 aa28.82■■■□□ 2.2
LITAF-201ENST00000339430 SUPT5HO00267 1087 aaKnown RBP28.46■■■□□ 2.15
LITAF-201ENST00000339430 UNC13AQ9UPW8 1703 aa28.43■■■□□ 2.14
LITAF-201ENST00000339430 PABPN1Q86U42 306 aaKnown RBP eCLIP28.15■■■□□ 2.1
LITAF-201ENST00000339430 BICRAQ9NZM4 1560 aa28.15■■■□□ 2.1
LITAF-201ENST00000339430 CECR2Q9BXF3 1484 aa27.89■■■□□ 2.06
LITAF-201ENST00000339430 RSF1Q96T23 1441 aaPredicted RBP27.73■■■□□ 2.03
LITAF-201ENST00000339430 MROH2BQ7Z745 1585 aa27.69■■■□□ 2.02
LITAF-201ENST00000339430 BAZ1AQ9NRL2 1556 aaPredicted RBP27.67■■■□□ 2.02
LITAF-201ENST00000339430 SMARCA4P51532 1647 aa27.57■■■□□ 2
LITAF-201ENST00000339430 CHIC1Q5VXU3 224 aa27.55■■■□□ 2
LITAF-201ENST00000339430 WIZO95785 1651 aa27.46■■□□□ 1.99
LITAF-201ENST00000339430 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
LITAF-201ENST00000339430 PEG3Q9GZU2 1588 aa27.21■■□□□ 1.95
LITAF-201ENST00000339430 ATAD2BQ9ULI0 1458 aa27.18■■□□□ 1.94
LITAF-201ENST00000339430 SMARCA2P51531 1590 aa27.14■■□□□ 1.93
LITAF-201ENST00000339430 TOP2AP11388 1531 aaKnown RBP27.13■■□□□ 1.93
LITAF-201ENST00000339430 BAZ1BQ9UIG0 1483 aaKnown RBP27.02■■□□□ 1.92
LITAF-201ENST00000339430 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
LITAF-201ENST00000339430 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
LITAF-201ENST00000339430 HMGXB3Q12766 1538 aa26.89■■□□□ 1.9
LITAF-201ENST00000339430 CCDC88BA6NC98 1476 aa26.88■■□□□ 1.89
LITAF-201ENST00000339430 LOC105371045A0A1W2PR82 267 aa26.77■■□□□ 1.88
LITAF-201ENST00000339430 PCGF6Q9BYE7 350 aa26.57■■□□□ 1.84
LITAF-201ENST00000339430 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
LITAF-201ENST00000339430 TRIM41Q8WV44 630 aa26.5■■□□□ 1.83
LITAF-201ENST00000339430 HRCP23327 699 aa26.4■■□□□ 1.82
LITAF-201ENST00000339430 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.81
LITAF-201ENST00000339430 CFTRP13569 1480 aa26.32■■□□□ 1.8
LITAF-201ENST00000339430 ABCC8Q09428 1581 aa26.28■■□□□ 1.8
LITAF-201ENST00000339430 CADPSQ9ULU8 1353 aa26.28■■□□□ 1.8
LITAF-201ENST00000339430 EHMT2Q96KQ7 1210 aa26.15■■□□□ 1.78
LITAF-201ENST00000339430 NESP48681 1621 aa26.15■■□□□ 1.78
LITAF-201ENST00000339430 PRDM2Q13029 1718 aa26.13■■□□□ 1.77
LITAF-201ENST00000339430 WRNQ14191 1432 aaPredicted RBP eCLIP26.11■■□□□ 1.77
LITAF-201ENST00000339430 LAMC3Q9Y6N6 1575 aa26.07■■□□□ 1.76
LITAF-201ENST00000339430 TRIM26Q12899 539 aaPredicted RBP26.06■■□□□ 1.76
LITAF-201ENST00000339430 SYNJ1O43426 1573 aa26.01■■□□□ 1.76
LITAF-201ENST00000339430 FANCD2Q9BXW9 1451 aa26■■□□□ 1.75
LITAF-201ENST00000339430 PPARGC1BQ86YN6 1023 aaKnown RBP25.96■■□□□ 1.75
LITAF-201ENST00000339430 TOP2BQ02880 1626 aa25.9■■□□□ 1.74
LITAF-201ENST00000339430 PDS5BQ9NTI5 1447 aa25.89■■□□□ 1.74
LITAF-201ENST00000339430 CUX1P39880 1505 aa25.89■■□□□ 1.74
LITAF-201ENST00000339430 BIVM-ERCC5R4GMW8 1640 aa25.85■■□□□ 1.73
LITAF-201ENST00000339430 CEP164Q9UPV0 1460 aa25.84■■□□□ 1.73
LITAF-201ENST00000339430 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
LITAF-201ENST00000339430 SOGA1O94964 1423 aa25.76■■□□□ 1.71
LITAF-201ENST00000339430 DNMBPQ6XZF7 1577 aa25.7■■□□□ 1.7
LITAF-201ENST00000339430 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
LITAF-201ENST00000339430 URB2Q14146 1524 aaKnown RBP25.68■■□□□ 1.7
LITAF-201ENST00000339430 RUSC2Q8N2Y8 1516 aa25.68■■□□□ 1.7
LITAF-201ENST00000339430 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
LITAF-201ENST00000339430 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
LITAF-201ENST00000339430 EEA1Q15075 1411 aa25.58■■□□□ 1.69
LITAF-201ENST00000339430 MRC2Q9UBG0 1479 aa25.57■■□□□ 1.68
LITAF-201ENST00000339430 POLA1P09884 1462 aaPredicted RBP25.56■■□□□ 1.68
LITAF-201ENST00000339430 CSRNP3Q8WYN3 585 aa25.53■■□□□ 1.68
LITAF-201ENST00000339430 RAD54L2Q9Y4B4 1467 aa25.49■■□□□ 1.67
LITAF-201ENST00000339430 KIF27Q86VH2 1401 aa25.46■■□□□ 1.67
LITAF-201ENST00000339430 CUX2O14529 1486 aa25.46■■□□□ 1.67
LITAF-201ENST00000339430 WDR62O43379 1518 aa25.44■■□□□ 1.66
LITAF-201ENST00000339430 THOC2Q8NI27 1593 aaKnown RBP25.4■■□□□ 1.66
LITAF-201ENST00000339430 ABCA10Q8WWZ4 1543 aa25.39■■□□□ 1.66
LITAF-201ENST00000339430 ZEB1P37275 1124 aaPredicted RBP25.37■■□□□ 1.65
LITAF-201ENST00000339430 CEP162Q5TB80 1403 aa25.34■■□□□ 1.65
LITAF-201ENST00000339430 WDR97A6NE52 1622 aa25.31■■□□□ 1.64
LITAF-201ENST00000339430 TARBP1Q13395 1621 aaKnown RBP25.31■■□□□ 1.64
LITAF-201ENST00000339430 UBTFP17480 764 aaKnown RBP25.29■■□□□ 1.64
LITAF-201ENST00000339430 TDRD9Q8NDG6 1382 aaKnown RBP25.28■■□□□ 1.64
LITAF-201ENST00000339430 TNIKQ9UKE5 1360 aa25.27■■□□□ 1.64
LITAF-201ENST00000339430 KIF21BO75037 1637 aa25.27■■□□□ 1.64
LITAF-201ENST00000339430 IGF1RP08069 1367 aa25.27■■□□□ 1.64
LITAF-201ENST00000339430 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
LITAF-201ENST00000339430 GOLGA3Q08378 1498 aa25.25■■□□□ 1.63
LITAF-201ENST00000339430 PRXQ9BXM0 1461 aa25.23■■□□□ 1.63
LITAF-201ENST00000339430 RAPGEF2Q9Y4G8 1499 aa25.23■■□□□ 1.63
LITAF-201ENST00000339430 IFT140Q96RY7 1462 aa25.22■■□□□ 1.63
LITAF-201ENST00000339430 ABCA5Q8WWZ7 1642 aa25.2■■□□□ 1.62
LITAF-201ENST00000339430 GAPVD1Q14C86 1478 aa25.18■■□□□ 1.62
LITAF-201ENST00000339430 AQRO60306 1485 aaKnown RBP eCLIP25.15■■□□□ 1.622e-8■■■□□ 18.1
LITAF-201ENST00000339430 ERICH3Q5RHP9 1530 aa25.14■■□□□ 1.61
LITAF-201ENST00000339430 ZNF608Q9ULD9 1512 aaPredicted RBP25.14■■□□□ 1.61
LITAF-201ENST00000339430 CARMIL1Q5VZK9 1371 aa25.13■■□□□ 1.61
LITAF-201ENST00000339430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.11■■□□□ 1.61
LITAF-201ENST00000339430 CUL7Q14999 1698 aa25.05■■□□□ 1.6
LITAF-201ENST00000339430 PBRM1Q86U86 1689 aa25.03■■□□□ 1.6
LITAF-201ENST00000339430 EIF4G3O43432 1585 aaKnown RBP25.02■■□□□ 1.6
LITAF-201ENST00000339430 CCER1Q8TC90 406 aaPredicted RBP25.01■■□□□ 1.59
LITAF-201ENST00000339430 GRIN2BQ13224 1484 aa25■■□□□ 1.59
LITAF-201ENST00000339430 RANGAP1P46060 587 aaPredicted RBP24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms