RNA–Protein interactions for RNA: ENST00000397043.7

ATP2A3-206, Transcript of ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATP2A3, Length 3,197 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A3-206ENST00000397043 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.72
ATP2A3-206ENST00000397043 SHROOM4Q9ULL8 1493 aa28.13■■■□□ 2.09
ATP2A3-206ENST00000397043 SUPT5HO00267 1087 aaKnown RBP27.7■■■□□ 2.03
ATP2A3-206ENST00000397043 DCAF8L2P0C7V8 631 aa27.51■■□□□ 1.99
ATP2A3-206ENST00000397043 ZCCHC6Q5VYS8 1495 aaKnown RBP27.02■■□□□ 1.92
ATP2A3-206ENST00000397043 CCDC180Q9P1Z9 1646 aa26.83■■□□□ 1.89
ATP2A3-206ENST00000397043 CHIC1Q5VXU3 224 aa26.62■■□□□ 1.85
ATP2A3-206ENST00000397043 MYO15BQ96JP2 1530 aa26.43■■□□□ 1.82
ATP2A3-206ENST00000397043 PCGF6Q9BYE7 350 aa26.24■■□□□ 1.79
ATP2A3-206ENST00000397043 LOC105371045A0A1W2PR82 267 aa26.1■■□□□ 1.77
ATP2A3-206ENST00000397043 HRCP23327 699 aa26.02■■□□□ 1.76
ATP2A3-206ENST00000397043 DCAF1Q9Y4B6 1507 aa25.94■■□□□ 1.74
ATP2A3-206ENST00000397043 PPARGC1BQ86YN6 1023 aaKnown RBP25.77■■□□□ 1.72
ATP2A3-206ENST00000397043 EHMT2Q96KQ7 1210 aa25.76■■□□□ 1.71
ATP2A3-206ENST00000397043 FAM9AQ8IZU1 332 aaPredicted RBP25.72■■□□□ 1.71
ATP2A3-206ENST00000397043 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
ATP2A3-206ENST00000397043 TRIM41Q8WV44 630 aa25.62■■□□□ 1.69
ATP2A3-206ENST00000397043 RSF1Q96T23 1441 aaPredicted RBP25.51■■□□□ 1.67
ATP2A3-206ENST00000397043 ABCC9O60706 1549 aa25.49■■□□□ 1.67
ATP2A3-206ENST00000397043 TRIM26Q12899 539 aaPredicted RBP25.43■■□□□ 1.66
ATP2A3-206ENST00000397043 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
ATP2A3-206ENST00000397043 CECR2Q9BXF3 1484 aa25.18■■□□□ 1.62
ATP2A3-206ENST00000397043 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
ATP2A3-206ENST00000397043 NACADO15069 1562 aa24.96■■□□□ 1.59
ATP2A3-206ENST00000397043 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
ATP2A3-206ENST00000397043 WIZO95785 1651 aa24.87■■□□□ 1.57
ATP2A3-206ENST00000397043 ZEB1P37275 1124 aaPredicted RBP24.85■■□□□ 1.57
ATP2A3-206ENST00000397043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.66■■□□□ 1.54
ATP2A3-206ENST00000397043 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
ATP2A3-206ENST00000397043 CCER1Q8TC90 406 aaPredicted RBP24.61■■□□□ 1.53
ATP2A3-206ENST00000397043 BAZ1AQ9NRL2 1556 aaPredicted RBP24.57■■□□□ 1.52
ATP2A3-206ENST00000397043 UBTFP17480 764 aaKnown RBP24.52■■□□□ 1.52
ATP2A3-206ENST00000397043 ABCC8Q09428 1581 aa24.51■■□□□ 1.51
ATP2A3-206ENST00000397043 CCDC88BA6NC98 1476 aa24.44■■□□□ 1.5
ATP2A3-206ENST00000397043 SOGA1O94964 1423 aa24.36■■□□□ 1.49
ATP2A3-206ENST00000397043 TOP2AP11388 1531 aaKnown RBP24.33■■□□□ 1.49
ATP2A3-206ENST00000397043 RANGAP1P46060 587 aaPredicted RBP24.33■■□□□ 1.48
ATP2A3-206ENST00000397043 SMARCA4P51532 1647 aa24.31■■□□□ 1.48
ATP2A3-206ENST00000397043 CSRNP3Q8WYN3 585 aa24.31■■□□□ 1.48
ATP2A3-206ENST00000397043 CEP162Q5TB80 1403 aa24.26■■□□□ 1.47
ATP2A3-206ENST00000397043 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
ATP2A3-206ENST00000397043 EIF4G1Q04637 1599 aaKnown RBP24.22■■□□□ 1.47
ATP2A3-206ENST00000397043 RUSC2Q8N2Y8 1516 aa24.22■■□□□ 1.47
ATP2A3-206ENST00000397043 SCAF1Q9H7N4 1312 aaKnown RBP24.14■■□□□ 1.45
ATP2A3-206ENST00000397043 UNC13AQ9UPW8 1703 aa24.1■■□□□ 1.45
ATP2A3-206ENST00000397043 TNIKQ9UKE5 1360 aa24.1■■□□□ 1.45
ATP2A3-206ENST00000397043 HNRNPUL2Q1KMD3 747 aaKnown RBP24.1■■□□□ 1.45
ATP2A3-206ENST00000397043 DIEXFQ68CQ4 756 aaKnown RBP24.07■■□□□ 1.44
ATP2A3-206ENST00000397043 WRNQ14191 1432 aaPredicted RBP eCLIP24.05■■□□□ 1.44
ATP2A3-206ENST00000397043 APLP2Q06481 763 aa24■■□□□ 1.43
ATP2A3-206ENST00000397043 EEA1Q15075 1411 aa23.97■■□□□ 1.43
ATP2A3-206ENST00000397043 GOLGA3Q08378 1498 aa23.96■■□□□ 1.43
ATP2A3-206ENST00000397043 NEUROD1Q13562 356 aa23.89■■□□□ 1.41
ATP2A3-206ENST00000397043 BICRAQ9NZM4 1560 aa23.88■■□□□ 1.41
ATP2A3-206ENST00000397043 ACIN1Q9UKV3 1341 aaKnown RBP23.84■■□□□ 1.41
ATP2A3-206ENST00000397043 YTHDC1Q96MU7 727 aaKnown RBP23.83■■□□□ 1.41
ATP2A3-206ENST00000397043 CLIP1P30622 1438 aa23.83■■□□□ 1.41
ATP2A3-206ENST00000397043 BAZ1BQ9UIG0 1483 aaKnown RBP23.83■■□□□ 1.4
ATP2A3-206ENST00000397043 CENPBP07199 599 aaPredicted RBP23.8■■□□□ 1.4
ATP2A3-206ENST00000397043 CEP164Q9UPV0 1460 aa23.79■■□□□ 1.4
ATP2A3-206ENST00000397043 SYNJ1O43426 1573 aa23.79■■□□□ 1.4
ATP2A3-206ENST00000397043 ATAD2BQ9ULI0 1458 aa23.78■■□□□ 1.4
ATP2A3-206ENST00000397043 ZNF316A6NFI3 1004 aaPredicted RBP23.76■■□□□ 1.39
ATP2A3-206ENST00000397043 GTF3C3Q9Y5Q9 886 aa23.73■■□□□ 1.39
ATP2A3-206ENST00000397043 RAPGEF2Q9Y4G8 1499 aa23.7■■□□□ 1.38
ATP2A3-206ENST00000397043 VPS8Q8N3P4 1428 aa23.61■■□□□ 1.37
ATP2A3-206ENST00000397043 PEG3Q9GZU2 1588 aa23.6■■□□□ 1.37
ATP2A3-206ENST00000397043 PELP1Q8IZL8 1130 aaKnown RBP23.58■■□□□ 1.37
ATP2A3-206ENST00000397043 ITGAEP38570 1179 aa23.56■■□□□ 1.36
ATP2A3-206ENST00000397043 MIER1Q8N108 512 aa23.53■■□□□ 1.36
ATP2A3-206ENST00000397043 KIF21BO75037 1637 aa23.53■■□□□ 1.36
ATP2A3-206ENST00000397043 KANK4Q5T7N3 995 aaPredicted RBP23.46■■□□□ 1.35
ATP2A3-206ENST00000397043 TOP2BQ02880 1626 aa23.36■■□□□ 1.33
ATP2A3-206ENST00000397043 ATP1B4Q9UN42 357 aaPredicted RBP23.36■■□□□ 1.33
ATP2A3-206ENST00000397043 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
ATP2A3-206ENST00000397043 P3H3Q8IVL6 736 aa23.25■■□□□ 1.31
ATP2A3-206ENST00000397043 PRXQ9BXM0 1461 aa23.25■■□□□ 1.31
ATP2A3-206ENST00000397043 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
ATP2A3-206ENST00000397043 CUX1P39880 1505 aa23.23■■□□□ 1.31
ATP2A3-206ENST00000397043 DHX57Q6P158 1386 aaKnown RBP23.19■■□□□ 1.3
ATP2A3-206ENST00000397043 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
ATP2A3-206ENST00000397043 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
ATP2A3-206ENST00000397043 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
ATP2A3-206ENST00000397043 FAM50AQ14320 339 aaKnown RBP23.14■■□□□ 1.29
ATP2A3-206ENST00000397043 CUX2O14529 1486 aa23.13■■□□□ 1.29
ATP2A3-206ENST00000397043 CCNB3Q8WWL7 1395 aa23.1■■□□□ 1.29
ATP2A3-206ENST00000397043 CFTRP13569 1480 aa23.08■■□□□ 1.29
ATP2A3-206ENST00000397043 HMGXB3Q12766 1538 aa23.07■■□□□ 1.28
ATP2A3-206ENST00000397043 ARHGAP35Q9NRY4 1499 aa23.06■■□□□ 1.28
ATP2A3-206ENST00000397043 CLSPNQ9HAW4 1339 aa23.04■■□□□ 1.28
ATP2A3-206ENST00000397043 IGF1RP08069 1367 aa23.02■■□□□ 1.28
ATP2A3-206ENST00000397043 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
ATP2A3-206ENST00000397043 RRBP1Q9P2E9 1410 aaKnown RBP22.97■■□□□ 1.27
ATP2A3-206ENST00000397043 RAB3GAP2Q9H2M9 1393 aa22.95■■□□□ 1.26
ATP2A3-206ENST00000397043 CADPSQ9ULU8 1353 aa22.95■■□□□ 1.26
ATP2A3-206ENST00000397043 SIN3AQ96ST3 1273 aa22.92■■□□□ 1.26
ATP2A3-206ENST00000397043 FGD5Q6ZNL6 1462 aa22.9■■□□□ 1.26
ATP2A3-206ENST00000397043 HIRIP3Q9BW71 556 aaPredicted RBP22.89■■□□□ 1.25
ATP2A3-206ENST00000397043 KCNH8Q96L42 1107 aa22.84■■□□□ 1.25
ATP2A3-206ENST00000397043 PHLDB1Q86UU1 1377 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms