RNA–Protein interactions for RNA: ENST00000262795.5

SHANK3-201, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

APPRIS P5 TSL 5 BASIC

Gene SHANK3, Length 7,091 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-201ENST00000262795 DCAF8L2P0C7V8 631 aa28.91■■■□□ 2.22
SHANK3-201ENST00000262795 EHMT2Q96KQ7 1210 aa26.6■■□□□ 1.85
SHANK3-201ENST00000262795 SUPT5HO00267 1087 aaKnown RBP26.21■■□□□ 1.79
SHANK3-201ENST00000262795 SHROOM4Q9ULL8 1493 aa25.9■■□□□ 1.74
SHANK3-201ENST00000262795 TTBK1Q5TCY1 1321 aaPredicted RBP25.47■■□□□ 1.67
SHANK3-201ENST00000262795 RANGAP1P46060 587 aaPredicted RBP25.47■■□□□ 1.67
SHANK3-201ENST00000262795 FAM9AQ8IZU1 332 aaPredicted RBP25.41■■□□□ 1.66
SHANK3-201ENST00000262795 ATP1B4Q9UN42 357 aaPredicted RBP25.28■■□□□ 1.64
SHANK3-201ENST00000262795 APLP2Q06481 763 aa25.26■■□□□ 1.63
SHANK3-201ENST00000262795 MYT1LQ9UL68 1186 aa24.8■■□□□ 1.56
SHANK3-201ENST00000262795 CHIC1Q5VXU3 224 aa24.73■■□□□ 1.55
SHANK3-201ENST00000262795 PELP1Q8IZL8 1130 aaKnown RBP24.58■■□□□ 1.53
SHANK3-201ENST00000262795 NISCHQ9Y2I1 1504 aa24.5■■□□□ 1.51
SHANK3-201ENST00000262795 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.33■■□□□ 1.49
SHANK3-201ENST00000262795 HNRNPUL2Q1KMD3 747 aaKnown RBP24.33■■□□□ 1.49
SHANK3-201ENST00000262795 PCGF6Q9BYE7 350 aa24.25■■□□□ 1.47
SHANK3-201ENST00000262795 ERICH6Q7L0X2 663 aa24.21■■□□□ 1.47
SHANK3-201ENST00000262795 UBTFP17480 764 aaKnown RBP24.19■■□□□ 1.46
SHANK3-201ENST00000262795 MYT1Q01538 1121 aa24.13■■□□□ 1.45
SHANK3-201ENST00000262795 POLR3GLQ9BT43 218 aa24.06■■□□□ 1.44
SHANK3-201ENST00000262795 CNGB1Q14028 1251 aaPredicted RBP24■■□□□ 1.43
SHANK3-201ENST00000262795 SLC4A1APQ9BWU0 796 aaKnown RBP24■■□□□ 1.43
SHANK3-201ENST00000262795 TRIM41Q8WV44 630 aa23.96■■□□□ 1.43
SHANK3-201ENST00000262795 PPARGC1BQ86YN6 1023 aaKnown RBP23.92■■□□□ 1.42
SHANK3-201ENST00000262795 ITGAEP38570 1179 aa23.85■■□□□ 1.41
SHANK3-201ENST00000262795 CCER1Q8TC90 406 aaPredicted RBP23.79■■□□□ 1.4
SHANK3-201ENST00000262795 PLPPR3Q6T4P5 718 aa23.65■■□□□ 1.38
SHANK3-201ENST00000262795 YTHDC1Q96MU7 727 aaKnown RBP23.6■■□□□ 1.37
SHANK3-201ENST00000262795 FBLN2P98095 1184 aa23.51■■□□□ 1.35
SHANK3-201ENST00000262795 BCANQ96GW7 911 aa23.44■■□□□ 1.34
SHANK3-201ENST00000262795 SLC24A1O60721 1099 aa23.42■■□□□ 1.34
SHANK3-201ENST00000262795 CENPBP07199 599 aaPredicted RBP23.4■■□□□ 1.34
SHANK3-201ENST00000262795 PABPN1Q86U42 306 aaKnown RBP eCLIP23.35■■□□□ 1.33
SHANK3-201ENST00000262795 NEFLP07196 543 aa23.32■■□□□ 1.32
SHANK3-201ENST00000262795 BCL11AQ9H165 835 aa23.2■■□□□ 1.31
SHANK3-201ENST00000262795 DAXXQ9UER7 740 aaPredicted RBP23.09■■□□□ 1.29
SHANK3-201ENST00000262795 ARID3CA6NKF2 412 aa23.08■■□□□ 1.29
SHANK3-201ENST00000262795 ABCC9O60706 1549 aa22.98■■□□□ 1.27
SHANK3-201ENST00000262795 FAM50AQ14320 339 aaKnown RBP22.98■■□□□ 1.27
SHANK3-201ENST00000262795 TRIM52Q96A61 297 aa22.98■■□□□ 1.27
SHANK3-201ENST00000262795 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
SHANK3-201ENST00000262795 ZEB1P37275 1124 aaPredicted RBP22.89■■□□□ 1.25
SHANK3-201ENST00000262795 CLSPNQ9HAW4 1339 aa22.86■■□□□ 1.25
SHANK3-201ENST00000262795 ESF1Q9H501 851 aaKnown RBP22.84■■□□□ 1.25
SHANK3-201ENST00000262795 A0A0G2JS52 829 aa22.8■■□□□ 1.24
SHANK3-201ENST00000262795 SCAF1Q9H7N4 1312 aaKnown RBP22.78■■□□□ 1.24
SHANK3-201ENST00000262795 PLEKHG5O94827 1062 aa22.77■■□□□ 1.24
SHANK3-201ENST00000262795 NEUROD1Q13562 356 aa22.69■■□□□ 1.22
SHANK3-201ENST00000262795 SENP3Q9H4L4 574 aaPredicted RBP22.67■■□□□ 1.22
SHANK3-201ENST00000262795 STAG3Q9UJ98 1225 aa22.66■■□□□ 1.22
SHANK3-201ENST00000262795 P3H3Q8IVL6 736 aa22.64■■□□□ 1.21
SHANK3-201ENST00000262795 ZNF777Q9ULD5 760 aaPredicted RBP22.63■■□□□ 1.21
SHANK3-201ENST00000262795 CHGAP10645 457 aaKnown RBP22.6■■□□□ 1.21
SHANK3-201ENST00000262795 HRCP23327 699 aa22.6■■□□□ 1.21
SHANK3-201ENST00000262795 LOC105371045A0A1W2PR82 267 aa22.59■■□□□ 1.21
SHANK3-201ENST00000262795 ZBTB47Q9UFB7 747 aaPredicted RBP22.54■■□□□ 1.2
SHANK3-201ENST00000262795 ZNF316A6NFI3 1004 aaPredicted RBP22.52■■□□□ 1.19
SHANK3-201ENST00000262795 NPM1P06748 294 aaKnown RBP eCLIP22.45■■□□□ 1.18
SHANK3-201ENST00000262795 ZBTB7CA1YPR0 619 aa22.44■■□□□ 1.18
SHANK3-201ENST00000262795 NEFMP07197 916 aa22.37■■□□□ 1.17
SHANK3-201ENST00000262795 CANXP27824 592 aaKnown RBP22.36■■□□□ 1.17
SHANK3-201ENST00000262795 TRIM26Q12899 539 aaPredicted RBP22.27■■□□□ 1.16
SHANK3-201ENST00000262795 C14orf37Q86TY3 774 aa22.21■■□□□ 1.15
SHANK3-201ENST00000262795 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.18■■□□□ 1.141e-6■□□□□ 9.5
SHANK3-201ENST00000262795 RTL5Q5HYW3 569 aaPredicted RBP22.17■■□□□ 1.14
SHANK3-201ENST00000262795 ARID4BQ4LE39 1312 aaPredicted RBP22.15■■□□□ 1.14
SHANK3-201ENST00000262795 TRHP20396 242 aaPredicted RBP22.15■■□□□ 1.14
SHANK3-201ENST00000262795 HAP1P54257 671 aaPredicted RBP22.12■■□□□ 1.13
SHANK3-201ENST00000262795 GTF3C3Q9Y5Q9 886 aa22.11■■□□□ 1.13
SHANK3-201ENST00000262795 ARXQ96QS3 562 aa22.01■■□□□ 1.11
SHANK3-201ENST00000262795 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
SHANK3-201ENST00000262795 KCNH8Q96L42 1107 aa21.92■■□□□ 1.1
SHANK3-201ENST00000262795 EIF5BO60841 1220 aaKnown RBP21.9■■□□□ 1.1
SHANK3-201ENST00000262795 TULP1O00294 542 aaPredicted RBP21.9■■□□□ 1.1
SHANK3-201ENST00000262795 NPM2Q86SE8 214 aaKnown RBP21.9■■□□□ 1.1
SHANK3-201ENST00000262795 SALL2Q9Y467 1007 aaPredicted RBP21.86■■□□□ 1.09
SHANK3-201ENST00000262795 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
SHANK3-201ENST00000262795 ANP32CO43423 234 aa21.85■■□□□ 1.09
SHANK3-201ENST00000262795 CDK11AQ9UQ88 783 aaPredicted RBP21.84■■□□□ 1.09
SHANK3-201ENST00000262795 LMOD2Q6P5Q4 547 aa21.83■■□□□ 1.08
SHANK3-201ENST00000262795 CHMP7Q8WUX9 453 aaPredicted RBP21.82■■□□□ 1.08
SHANK3-201ENST00000262795 CHIC2Q9UKJ5 165 aa21.79■■□□□ 1.08
SHANK3-201ENST00000262795 NPHP1O15259 732 aa21.77■■□□□ 1.08
SHANK3-201ENST00000262795 KDM2AQ9Y2K7 1162 aa21.75■■□□□ 1.07
SHANK3-201ENST00000262795 MLECQ14165 292 aa21.61■■□□□ 1.05
SHANK3-201ENST00000262795 HSP90AA1P07900 732 aaKnown RBP21.58■■□□□ 1.04
SHANK3-201ENST00000262795 NCBP3Q53F19 620 aaKnown RBP21.57■■□□□ 1.04
SHANK3-201ENST00000262795 TAOK2Q9UL54 1235 aa21.56■■□□□ 1.04
SHANK3-201ENST00000262795 PPM1GO15355 546 aaPredicted RBP21.52■■□□□ 1.04
SHANK3-201ENST00000262795 SCRIBQ14160 1630 aa21.51■■□□□ 1.03
SHANK3-201ENST00000262795 ACIN1Q9UKV3 1341 aaKnown RBP21.51■■□□□ 1.03
SHANK3-201ENST00000262795 TMC1Q8TDI8 760 aa21.49■■□□□ 1.03
SHANK3-201ENST00000262795 AEBP2Q6ZN18 517 aaPredicted RBP21.49■■□□□ 1.03
SHANK3-201ENST00000262795 TSPY4P0CV99 314 aa21.44■■□□□ 1.02
SHANK3-201ENST00000262795 TSPY10P0CW01 314 aa21.44■■□□□ 1.02
SHANK3-201ENST00000262795 FAM9BQ8IZU0 186 aa21.43■■□□□ 1.02
SHANK3-201ENST00000262795 ERCC6Q03468 1493 aa21.43■■□□□ 1.02
SHANK3-201ENST00000262795 CDK11BP21127 795 aaKnown RBP21.42■■□□□ 1.02
SHANK3-201ENST00000262795 RGL3Q3MIN7 710 aa21.37■■□□□ 1.01
SHANK3-201ENST00000262795 SOX12O15370 315 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms