Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.26□□□□□ -0.13
COL8A1P27658 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.26□□□□□ -0.13
COL8A1P27658 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.26□□□□□ -0.13
COL8A1P27658 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.26□□□□□ -0.13
COL8A1P27658 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 SLC25A24P2-201ENST00000415059 510 ntBASIC14.25□□□□□ -0.13
COL8A1P27658 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 SERBP1P3-201ENST00000459980 809 ntBASIC14.25□□□□□ -0.13
COL8A1P27658 AC098859.1-201ENST00000502915 1238 ntBASIC14.25□□□□□ -0.13
COL8A1P27658 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.25□□□□□ -0.13
COL8A1P27658 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
COL8A1P27658 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
COL8A1P27658 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL8A1P27658 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL8A1P27658 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.24□□□□□ -0.13
COL8A1P27658 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.24□□□□□ -0.13
COL8A1P27658 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.24□□□□□ -0.13
COL8A1P27658 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC14.24□□□□□ -0.13
COL8A1P27658 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.24□□□□□ -0.13
COL8A1P27658 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 AC079328.1-201ENST00000560358 952 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms