RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 NISCHQ9Y2I1 1504 aa36.16■■■■□ 3.38
NKX3-1-202ENST00000523261 ABCC9O60706 1549 aa33.72■■■□□ 2.99
NKX3-1-202ENST00000523261 CCDC180Q9P1Z9 1646 aa32.84■■■□□ 2.85
NKX3-1-202ENST00000523261 DNAJC5BQ9UF47 199 aa32.46■■■□□ 2.79
NKX3-1-202ENST00000523261 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
NKX3-1-202ENST00000523261 NACADO15069 1562 aa31.25■■■□□ 2.59
NKX3-1-202ENST00000523261 PABPN1Q86U42 306 aaKnown RBP eCLIP31.23■■■□□ 2.59
NKX3-1-202ENST00000523261 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
NKX3-1-202ENST00000523261 BICRAQ9NZM4 1560 aa30.84■■■□□ 2.53
NKX3-1-202ENST00000523261 DCAF8L2P0C7V8 631 aa30.83■■■□□ 2.53
NKX3-1-202ENST00000523261 MYO15BQ96JP2 1530 aa30.54■■■□□ 2.48
NKX3-1-202ENST00000523261 CECR2Q9BXF3 1484 aa30.46■■■□□ 2.47
NKX3-1-202ENST00000523261 DNAJC5Q9H3Z4 198 aa30.46■■■□□ 2.47
NKX3-1-202ENST00000523261 CC2D2AQ9P2K1 1620 aa30.41■■■□□ 2.46
NKX3-1-202ENST00000523261 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
NKX3-1-202ENST00000523261 EIF4G1Q04637 1599 aaKnown RBP30.13■■■□□ 2.41
NKX3-1-202ENST00000523261 SCRIBQ14160 1630 aa29.85■■■□□ 2.37
NKX3-1-202ENST00000523261 DCAF1Q9Y4B6 1507 aa29.81■■■□□ 2.36
NKX3-1-202ENST00000523261 ZCCHC6Q5VYS8 1495 aaKnown RBP29.78■■■□□ 2.36
NKX3-1-202ENST00000523261 CUX2O14529 1486 aa29.43■■■□□ 2.3
NKX3-1-202ENST00000523261 ERCC6Q03468 1493 aa29.14■■■□□ 2.26
NKX3-1-202ENST00000523261 NCAPD3P42695 1498 aa28.88■■■□□ 2.21
NKX3-1-202ENST00000523261 NESP48681 1621 aa28.72■■■□□ 2.19
NKX3-1-202ENST00000523261 TRIM41Q8WV44 630 aa28.7■■■□□ 2.18
NKX3-1-202ENST00000523261 ATAD2BQ9ULI0 1458 aa28.66■■■□□ 2.18
NKX3-1-202ENST00000523261 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
NKX3-1-202ENST00000523261 HMGXB3Q12766 1538 aa28.58■■■□□ 2.17
NKX3-1-202ENST00000523261 SMARCA2P51531 1590 aa28.51■■■□□ 2.15
NKX3-1-202ENST00000523261 SMARCA4P51532 1647 aa28.4■■■□□ 2.14
NKX3-1-202ENST00000523261 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
NKX3-1-202ENST00000523261 BAZ1BQ9UIG0 1483 aaKnown RBP28.31■■■□□ 2.12
NKX3-1-202ENST00000523261 KIF21AQ7Z4S6 1674 aa28.31■■■□□ 2.12
NKX3-1-202ENST00000523261 PDS5BQ9NTI5 1447 aa28.21■■■□□ 2.11
NKX3-1-202ENST00000523261 PEG3Q9GZU2 1588 aa28.15■■■□□ 2.1
NKX3-1-202ENST00000523261 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
NKX3-1-202ENST00000523261 MRC2Q9UBG0 1479 aa28.04■■■□□ 2.08
NKX3-1-202ENST00000523261 WDR62O43379 1518 aa28.01■■■□□ 2.07
NKX3-1-202ENST00000523261 CADPSQ9ULU8 1353 aa27.94■■■□□ 2.06
NKX3-1-202ENST00000523261 OSCARQ8IYS5 282 aa27.91■■■□□ 2.06
NKX3-1-202ENST00000523261 MROH2BQ7Z745 1585 aa27.86■■■□□ 2.05
NKX3-1-202ENST00000523261 CEP164Q9UPV0 1460 aa27.73■■■□□ 2.03
NKX3-1-202ENST00000523261 RIMBP3CA6NJZ7 1639 aa27.67■■■□□ 2.02
NKX3-1-202ENST00000523261 RIMBP3BA6NNM3 1639 aa27.67■■■□□ 2.02
NKX3-1-202ENST00000523261 RIMBP3Q9UFD9 1639 aa27.67■■■□□ 2.02
NKX3-1-202ENST00000523261 FANCD2Q9BXW9 1451 aa27.63■■■□□ 2.01
NKX3-1-202ENST00000523261 ARHGEF11O15085 1522 aa27.5■■□□□ 1.99
NKX3-1-202ENST00000523261 URB2Q14146 1524 aaKnown RBP27.48■■□□□ 1.99
NKX3-1-202ENST00000523261 WIZO95785 1651 aa27.46■■□□□ 1.99
NKX3-1-202ENST00000523261 CFTRP13569 1480 aa27.45■■□□□ 1.99
NKX3-1-202ENST00000523261 CYB5RLQ6IPT4 315 aa27.32■■□□□ 1.96
NKX3-1-202ENST00000523261 ZNF608Q9ULD9 1512 aaPredicted RBP27.29■■□□□ 1.96
NKX3-1-202ENST00000523261 TRHP20396 242 aaPredicted RBP27.28■■□□□ 1.96
NKX3-1-202ENST00000523261 IFT140Q96RY7 1462 aa27.21■■□□□ 1.95
NKX3-1-202ENST00000523261 ARAP1Q96P48 1450 aa27.19■■□□□ 1.94
NKX3-1-202ENST00000523261 AEBP2Q6ZN18 517 aaPredicted RBP27.15■■□□□ 1.94
NKX3-1-202ENST00000523261 EIF4G3O43432 1585 aaKnown RBP27.08■■□□□ 1.93
NKX3-1-202ENST00000523261 PRDM2Q13029 1718 aa27.07■■□□□ 1.92
NKX3-1-202ENST00000523261 TOP2AP11388 1531 aaKnown RBP27.05■■□□□ 1.92
NKX3-1-202ENST00000523261 CHD1O14646 1710 aa27.04■■□□□ 1.92
NKX3-1-202ENST00000523261 TOPBP1Q92547 1522 aa27.01■■□□□ 1.91
NKX3-1-202ENST00000523261 RSF1Q96T23 1441 aaPredicted RBP27.01■■□□□ 1.91
NKX3-1-202ENST00000523261 AQRO60306 1485 aaKnown RBP eCLIP26.91■■□□□ 1.9
NKX3-1-202ENST00000523261 FBLN2P98095 1184 aa26.87■■□□□ 1.89
NKX3-1-202ENST00000523261 ABCC8Q09428 1581 aa26.86■■□□□ 1.89
NKX3-1-202ENST00000523261 TARBP1Q13395 1621 aaKnown RBP26.86■■□□□ 1.89
NKX3-1-202ENST00000523261 DNMBPQ6XZF7 1577 aa26.83■■□□□ 1.89
NKX3-1-202ENST00000523261 CCDC88BA6NC98 1476 aa26.76■■□□□ 1.87
NKX3-1-202ENST00000523261 CLASP1Q7Z460 1538 aa26.74■■□□□ 1.87
NKX3-1-202ENST00000523261 POLA1P09884 1462 aaPredicted RBP26.68■■□□□ 1.86
NKX3-1-202ENST00000523261 SNAPC4Q5SXM2 1469 aa26.6■■□□□ 1.85
NKX3-1-202ENST00000523261 RAD54L2Q9Y4B4 1467 aa26.6■■□□□ 1.85
NKX3-1-202ENST00000523261 TDRD9Q8NDG6 1382 aaKnown RBP26.59■■□□□ 1.85
NKX3-1-202ENST00000523261 SYNJ1O43426 1573 aa26.59■■□□□ 1.85
NKX3-1-202ENST00000523261 CHMP7Q8WUX9 453 aaPredicted RBP26.53■■□□□ 1.84
NKX3-1-202ENST00000523261 SOGA1O94964 1423 aa26.52■■□□□ 1.84
NKX3-1-202ENST00000523261 GAPVD1Q14C86 1478 aa26.5■■□□□ 1.83
NKX3-1-202ENST00000523261 MAGI1Q96QZ7 1491 aaPredicted RBP26.49■■□□□ 1.83
NKX3-1-202ENST00000523261 WDR97A6NE52 1622 aa26.49■■□□□ 1.83
NKX3-1-202ENST00000523261 SYNJ2O15056 1496 aa26.42■■□□□ 1.82
NKX3-1-202ENST00000523261 GRIN2BQ13224 1484 aa26.41■■□□□ 1.82
NKX3-1-202ENST00000523261 FGD5Q6ZNL6 1462 aa26.37■■□□□ 1.81
NKX3-1-202ENST00000523261 ERCC6L2Q5T890 1561 aa26.25■■□□□ 1.79
NKX3-1-202ENST00000523261 PBRM1Q86U86 1689 aa26.23■■□□□ 1.79
NKX3-1-202ENST00000523261 CUX1P39880 1505 aa26.23■■□□□ 1.79
NKX3-1-202ENST00000523261 KIF13AQ9H1H9 1805 aa26.18■■□□□ 1.78
NKX3-1-202ENST00000523261 ILDR1Q86SU0 546 aaPredicted RBP26.14■■□□□ 1.78
NKX3-1-202ENST00000523261 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
NKX3-1-202ENST00000523261 ABCA5Q8WWZ7 1642 aa26.08■■□□□ 1.77
NKX3-1-202ENST00000523261 GRIN2AQ12879 1464 aa26.06■■□□□ 1.76
NKX3-1-202ENST00000523261 NUP160Q12769 1436 aa26.04■■□□□ 1.76
NKX3-1-202ENST00000523261 ABCA10Q8WWZ4 1543 aa26.04■■□□□ 1.76
NKX3-1-202ENST00000523261 SHROOM2Q13796 1616 aa26.02■■□□□ 1.76
NKX3-1-202ENST00000523261 KDM4FA0A1W2PPD8 638 aa26■■□□□ 1.75
NKX3-1-202ENST00000523261 ADAMTS12P58397 1594 aa25.95■■□□□ 1.74
NKX3-1-202ENST00000523261 ABCC10Q5T3U5 1492 aa25.91■■□□□ 1.74
NKX3-1-202ENST00000523261 FAM69CQ0P6D2 419 aa25.91■■□□□ 1.74
NKX3-1-202ENST00000523261 DIP2BQ9P265 1576 aa25.83■■□□□ 1.73
NKX3-1-202ENST00000523261 PRG4Q92954 1404 aaPredicted RBP25.83■■□□□ 1.73
NKX3-1-202ENST00000523261 KDM6BO15054 1643 aa25.83■■□□□ 1.73
NKX3-1-202ENST00000523261 FHAD1B1AJZ9 1412 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms