RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 NISCHQ9Y2I1 1504 aa36.05■■■■□ 3.36
SNX1-214ENST00000625244 ABCC9O60706 1549 aa33.63■■■□□ 2.97
SNX1-214ENST00000625244 CCDC180Q9P1Z9 1646 aa32.62■■■□□ 2.81
SNX1-214ENST00000625244 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.79
SNX1-214ENST00000625244 RB1CC1Q8TDY2 1594 aa31.54■■■□□ 2.64
SNX1-214ENST00000625244 PABPN1Q86U42 306 aaKnown RBP eCLIP31.24■■■□□ 2.59
SNX1-214ENST00000625244 NACADO15069 1562 aa31.11■■■□□ 2.57
SNX1-214ENST00000625244 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
SNX1-214ENST00000625244 UNC13AQ9UPW8 1703 aa30.8■■■□□ 2.52
SNX1-214ENST00000625244 BICRAQ9NZM4 1560 aa30.71■■■□□ 2.51
SNX1-214ENST00000625244 CECR2Q9BXF3 1484 aa30.38■■■□□ 2.45
SNX1-214ENST00000625244 MYO15BQ96JP2 1530 aa30.38■■■□□ 2.45
SNX1-214ENST00000625244 DNAJC5Q9H3Z4 198 aa30.37■■■□□ 2.45
SNX1-214ENST00000625244 CC2D2AQ9P2K1 1620 aa30.29■■■□□ 2.44
SNX1-214ENST00000625244 SHROOM4Q9ULL8 1493 aa30.12■■■□□ 2.41
SNX1-214ENST00000625244 EIF4G1Q04637 1599 aaKnown RBP30.01■■■□□ 2.39
SNX1-214ENST00000625244 SCRIBQ14160 1630 aa29.77■■■□□ 2.36
SNX1-214ENST00000625244 DCAF1Q9Y4B6 1507 aa29.68■■■□□ 2.34
SNX1-214ENST00000625244 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
SNX1-214ENST00000625244 CUX2O14529 1486 aa29.29■■■□□ 2.28
SNX1-214ENST00000625244 ERCC6Q03468 1493 aa29.06■■■□□ 2.24
SNX1-214ENST00000625244 NCAPD3P42695 1498 aa28.78■■■□□ 2.2
SNX1-214ENST00000625244 TRIM41Q8WV44 630 aa28.68■■■□□ 2.18
SNX1-214ENST00000625244 NESP48681 1621 aa28.65■■■□□ 2.18
SNX1-214ENST00000625244 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
SNX1-214ENST00000625244 THOC2Q8NI27 1593 aaKnown RBP28.47■■■□□ 2.15
SNX1-214ENST00000625244 HMGXB3Q12766 1538 aa28.43■■■□□ 2.14
SNX1-214ENST00000625244 SMARCA2P51531 1590 aa28.39■■■□□ 2.14
SNX1-214ENST00000625244 SMARCA4P51532 1647 aa28.28■■■□□ 2.12
SNX1-214ENST00000625244 BAZ1BQ9UIG0 1483 aaKnown RBP28.22■■■□□ 2.11
SNX1-214ENST00000625244 LAMC3Q9Y6N6 1575 aa28.22■■■□□ 2.11
SNX1-214ENST00000625244 KIF21AQ7Z4S6 1674 aa28.16■■■□□ 2.1
SNX1-214ENST00000625244 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
SNX1-214ENST00000625244 PEG3Q9GZU2 1588 aa28.01■■■□□ 2.07
SNX1-214ENST00000625244 BAZ1AQ9NRL2 1556 aaPredicted RBP28■■■□□ 2.07
SNX1-214ENST00000625244 MRC2Q9UBG0 1479 aa27.94■■■□□ 2.06
SNX1-214ENST00000625244 WDR62O43379 1518 aa27.89■■■□□ 2.06
SNX1-214ENST00000625244 CADPSQ9ULU8 1353 aa27.88■■■□□ 2.05
SNX1-214ENST00000625244 OSCARQ8IYS5 282 aa27.86■■■□□ 2.05
SNX1-214ENST00000625244 MROH2BQ7Z745 1585 aa27.8■■■□□ 2.04
SNX1-214ENST00000625244 CEP164Q9UPV0 1460 aa27.64■■■□□ 2.01
SNX1-214ENST00000625244 RIMBP3CA6NJZ7 1639 aa27.56■■■□□ 2
SNX1-214ENST00000625244 RIMBP3BA6NNM3 1639 aa27.56■■■□□ 2
SNX1-214ENST00000625244 RIMBP3Q9UFD9 1639 aa27.56■■■□□ 2
SNX1-214ENST00000625244 FANCD2Q9BXW9 1451 aa27.56■■■□□ 2
SNX1-214ENST00000625244 URB2Q14146 1524 aaKnown RBP27.41■■□□□ 1.98
SNX1-214ENST00000625244 ARHGEF11O15085 1522 aa27.4■■□□□ 1.98
SNX1-214ENST00000625244 WIZO95785 1651 aa27.39■■□□□ 1.97
SNX1-214ENST00000625244 CFTRP13569 1480 aa27.37■■□□□ 1.97
SNX1-214ENST00000625244 CYB5RLQ6IPT4 315 aa27.31■■□□□ 1.96
SNX1-214ENST00000625244 TRHP20396 242 aaPredicted RBP27.28■■□□□ 1.96
SNX1-214ENST00000625244 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
SNX1-214ENST00000625244 IFT140Q96RY7 1462 aa27.13■■□□□ 1.93
SNX1-214ENST00000625244 AEBP2Q6ZN18 517 aaPredicted RBP27.1■■□□□ 1.93
SNX1-214ENST00000625244 ARAP1Q96P48 1450 aa27.09■■□□□ 1.93
SNX1-214ENST00000625244 TOP2AP11388 1531 aaKnown RBP26.96■■□□□ 1.91
SNX1-214ENST00000625244 EIF4G3O43432 1585 aaKnown RBP26.96■■□□□ 1.91
SNX1-214ENST00000625244 TOPBP1Q92547 1522 aa26.93■■□□□ 1.9
SNX1-214ENST00000625244 RSF1Q96T23 1441 aaPredicted RBP26.9■■□□□ 1.9
SNX1-214ENST00000625244 CHD1O14646 1710 aa26.9■■□□□ 1.9
SNX1-214ENST00000625244 AQRO60306 1485 aaKnown RBP eCLIP26.88■■□□□ 1.899e-7■■■■□ 26.4
SNX1-214ENST00000625244 FBLN2P98095 1184 aa26.88■■□□□ 1.89
SNX1-214ENST00000625244 PRDM2Q13029 1718 aa26.87■■□□□ 1.89
SNX1-214ENST00000625244 ABCC8Q09428 1581 aa26.75■■□□□ 1.87
SNX1-214ENST00000625244 TARBP1Q13395 1621 aaKnown RBP26.74■■□□□ 1.87
SNX1-214ENST00000625244 CCDC88BA6NC98 1476 aa26.73■■□□□ 1.87
SNX1-214ENST00000625244 DNMBPQ6XZF7 1577 aa26.71■■□□□ 1.87
SNX1-214ENST00000625244 CLASP1Q7Z460 1538 aa26.62■■□□□ 1.85
SNX1-214ENST00000625244 POLA1P09884 1462 aaPredicted RBP26.61■■□□□ 1.85
SNX1-214ENST00000625244 TDRD9Q8NDG6 1382 aaKnown RBP26.58■■□□□ 1.84
SNX1-214ENST00000625244 RAD54L2Q9Y4B4 1467 aa26.57■■□□□ 1.84
SNX1-214ENST00000625244 SNAPC4Q5SXM2 1469 aa26.55■■□□□ 1.84
SNX1-214ENST00000625244 CHMP7Q8WUX9 453 aaPredicted RBP26.52■■□□□ 1.84
SNX1-214ENST00000625244 SYNJ1O43426 1573 aa26.49■■□□□ 1.83
SNX1-214ENST00000625244 SOGA1O94964 1423 aa26.48■■□□□ 1.83
SNX1-214ENST00000625244 GAPVD1Q14C86 1478 aa26.42■■□□□ 1.82
SNX1-214ENST00000625244 MAGI1Q96QZ7 1491 aaPredicted RBP26.4■■□□□ 1.82
SNX1-214ENST00000625244 SYNJ2O15056 1496 aa26.34■■□□□ 1.81
SNX1-214ENST00000625244 WDR97A6NE52 1622 aa26.33■■□□□ 1.81
SNX1-214ENST00000625244 GRIN2BQ13224 1484 aa26.32■■□□□ 1.8
SNX1-214ENST00000625244 FGD5Q6ZNL6 1462 aa26.3■■□□□ 1.8
SNX1-214ENST00000625244 ERCC6L2Q5T890 1561 aa26.2■■□□□ 1.78
SNX1-214ENST00000625244 CUX1P39880 1505 aa26.16■■□□□ 1.78
SNX1-214ENST00000625244 ILDR1Q86SU0 546 aaPredicted RBP26.1■■□□□ 1.77
SNX1-214ENST00000625244 PBRM1Q86U86 1689 aa26.09■■□□□ 1.77
SNX1-214ENST00000625244 KIF13AQ9H1H9 1805 aa26.02■■□□□ 1.76
SNX1-214ENST00000625244 CEP170Q5SW79 1584 aa26.02■■□□□ 1.76
SNX1-214ENST00000625244 GRIN2AQ12879 1464 aa25.99■■□□□ 1.75
SNX1-214ENST00000625244 KDM4FA0A1W2PPD8 638 aa25.97■■□□□ 1.75
SNX1-214ENST00000625244 ABCA5Q8WWZ7 1642 aa25.96■■□□□ 1.75
SNX1-214ENST00000625244 ABCA10Q8WWZ4 1543 aa25.95■■□□□ 1.74
SNX1-214ENST00000625244 NUP160Q12769 1436 aa25.95■■□□□ 1.74
SNX1-214ENST00000625244 SHROOM2Q13796 1616 aa25.89■■□□□ 1.74
SNX1-214ENST00000625244 FAM69CQ0P6D2 419 aa25.89■■□□□ 1.74
SNX1-214ENST00000625244 ADAMTS12P58397 1594 aa25.84■■□□□ 1.73
SNX1-214ENST00000625244 ABCC10Q5T3U5 1492 aa25.84■■□□□ 1.73
SNX1-214ENST00000625244 PRG4Q92954 1404 aaPredicted RBP25.79■■□□□ 1.72
SNX1-214ENST00000625244 FHAD1B1AJZ9 1412 aa25.75■■□□□ 1.71
SNX1-214ENST00000625244 JPH4Q96JJ6 628 aa25.72■■□□□ 1.71
SNX1-214ENST00000625244 DIP2BQ9P265 1576 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms