RNA–Protein interactions for RNA: ENST00000423271.7

USB1-202, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,217 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-202ENST00000423271 NISCHQ9Y2I1 1504 aa37.73■■■■□ 3.63
USB1-202ENST00000423271 CCDC180Q9P1Z9 1646 aa33.73■■■□□ 2.99
USB1-202ENST00000423271 ABCC9O60706 1549 aa33.46■■■□□ 2.95
USB1-202ENST00000423271 RB1CC1Q8TDY2 1594 aa31.94■■■□□ 2.7
USB1-202ENST00000423271 NACADO15069 1562 aa31.79■■■□□ 2.68
USB1-202ENST00000423271 DCAF8L2P0C7V8 631 aa31.67■■■□□ 2.66
USB1-202ENST00000423271 MYO15BQ96JP2 1530 aa31.44■■■□□ 2.62
USB1-202ENST00000423271 ZCCHC6Q5VYS8 1495 aaKnown RBP31.35■■■□□ 2.61
USB1-202ENST00000423271 UNC13AQ9UPW8 1703 aa31.29■■■□□ 2.6
USB1-202ENST00000423271 PABPN1Q86U42 306 aaKnown RBP eCLIP31.18■■■□□ 2.58
USB1-202ENST00000423271 DCAF1Q9Y4B6 1507 aa31.16■■■□□ 2.58
USB1-202ENST00000423271 DNAJC5BQ9UF47 199 aa31.11■■■□□ 2.57
USB1-202ENST00000423271 BICRAQ9NZM4 1560 aa31.05■■■□□ 2.56
USB1-202ENST00000423271 SCRIBQ14160 1630 aa30.8■■■□□ 2.52
USB1-202ENST00000423271 SHROOM4Q9ULL8 1493 aa30.6■■■□□ 2.49
USB1-202ENST00000423271 EIF4G1Q04637 1599 aaKnown RBP30.25■■■□□ 2.43
USB1-202ENST00000423271 CC2D2AQ9P2K1 1620 aa30.24■■■□□ 2.43
USB1-202ENST00000423271 CECR2Q9BXF3 1484 aa30.09■■■□□ 2.41
USB1-202ENST00000423271 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
USB1-202ENST00000423271 NCAPD3P42695 1498 aa29.35■■■□□ 2.29
USB1-202ENST00000423271 ATAD2BQ9ULI0 1458 aa29.32■■■□□ 2.28
USB1-202ENST00000423271 BAZ1AQ9NRL2 1556 aaPredicted RBP29.26■■■□□ 2.27
USB1-202ENST00000423271 SMARCA2P51531 1590 aa29.24■■■□□ 2.27
USB1-202ENST00000423271 HMGXB3Q12766 1538 aa29.18■■■□□ 2.26
USB1-202ENST00000423271 MROH2BQ7Z745 1585 aa29.1■■■□□ 2.25
USB1-202ENST00000423271 PEG3Q9GZU2 1588 aa29.08■■■□□ 2.25
USB1-202ENST00000423271 BAZ1BQ9UIG0 1483 aaKnown RBP29.05■■■□□ 2.24
USB1-202ENST00000423271 NESP48681 1621 aa28.84■■■□□ 2.21
USB1-202ENST00000423271 ERCC6Q03468 1493 aa28.84■■■□□ 2.21
USB1-202ENST00000423271 WIZO95785 1651 aa28.77■■■□□ 2.2
USB1-202ENST00000423271 CUX2O14529 1486 aa28.67■■■□□ 2.18
USB1-202ENST00000423271 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.18
USB1-202ENST00000423271 RSF1Q96T23 1441 aaPredicted RBP28.59■■■□□ 2.17
USB1-202ENST00000423271 THOC2Q8NI27 1593 aaKnown RBP28.5■■■□□ 2.15
USB1-202ENST00000423271 KIF21AQ7Z4S6 1674 aa28.49■■■□□ 2.15
USB1-202ENST00000423271 CADPSQ9ULU8 1353 aa28.47■■■□□ 2.15
USB1-202ENST00000423271 PDS5BQ9NTI5 1447 aa28.44■■■□□ 2.14
USB1-202ENST00000423271 TOP2AP11388 1531 aaKnown RBP28.42■■■□□ 2.14
USB1-202ENST00000423271 DNAJC5Q9H3Z4 198 aa28.3■■■□□ 2.12
USB1-202ENST00000423271 MRC2Q9UBG0 1479 aa28.22■■■□□ 2.11
USB1-202ENST00000423271 CFTRP13569 1480 aa28.21■■■□□ 2.11
USB1-202ENST00000423271 CEP164Q9UPV0 1460 aa28.17■■■□□ 2.1
USB1-202ENST00000423271 FANCD2Q9BXW9 1451 aa28.16■■■□□ 2.1
USB1-202ENST00000423271 WDR62O43379 1518 aa28.15■■■□□ 2.1
USB1-202ENST00000423271 CCDC88BA6NC98 1476 aa28.08■■■□□ 2.09
USB1-202ENST00000423271 PRDM2Q13029 1718 aa27.99■■■□□ 2.07
USB1-202ENST00000423271 URB2Q14146 1524 aaKnown RBP27.94■■■□□ 2.06
USB1-202ENST00000423271 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
USB1-202ENST00000423271 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
USB1-202ENST00000423271 IFT140Q96RY7 1462 aa27.58■■■□□ 2.01
USB1-202ENST00000423271 ABCC8Q09428 1581 aa27.57■■■□□ 2
USB1-202ENST00000423271 ZNF608Q9ULD9 1512 aaPredicted RBP27.56■■■□□ 2
USB1-202ENST00000423271 SUPT5HO00267 1087 aaKnown RBP27.53■■■□□ 2
USB1-202ENST00000423271 POLA1P09884 1462 aaPredicted RBP27.42■■□□□ 1.98
USB1-202ENST00000423271 EIF4G3O43432 1585 aaKnown RBP27.42■■□□□ 1.98
USB1-202ENST00000423271 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
USB1-202ENST00000423271 OSCARQ8IYS5 282 aa27.37■■□□□ 1.97
USB1-202ENST00000423271 CUX1P39880 1505 aa27.33■■□□□ 1.97
USB1-202ENST00000423271 RAD54L2Q9Y4B4 1467 aa27.32■■□□□ 1.96
USB1-202ENST00000423271 AQRO60306 1485 aaKnown RBP eCLIP27.32■■□□□ 1.96
USB1-202ENST00000423271 FGD5Q6ZNL6 1462 aa27.29■■□□□ 1.96
USB1-202ENST00000423271 SOGA1O94964 1423 aa27.26■■□□□ 1.95
USB1-202ENST00000423271 TRIM41Q8WV44 630 aa27.22■■□□□ 1.95
USB1-202ENST00000423271 TDRD9Q8NDG6 1382 aaKnown RBP27.19■■□□□ 1.94
USB1-202ENST00000423271 CHD1O14646 1710 aa27.16■■□□□ 1.94
USB1-202ENST00000423271 WDR97A6NE52 1622 aa27.12■■□□□ 1.93
USB1-202ENST00000423271 RIMBP3CA6NJZ7 1639 aa27.07■■□□□ 1.92
USB1-202ENST00000423271 RIMBP3BA6NNM3 1639 aa27.07■■□□□ 1.92
USB1-202ENST00000423271 RIMBP3Q9UFD9 1639 aa27.07■■□□□ 1.92
USB1-202ENST00000423271 SNAPC4Q5SXM2 1469 aa27.06■■□□□ 1.92
USB1-202ENST00000423271 FBLN2P98095 1184 aa27.04■■□□□ 1.92
USB1-202ENST00000423271 ARHGEF11O15085 1522 aa27■■□□□ 1.91
USB1-202ENST00000423271 GRIN2BQ13224 1484 aa27■■□□□ 1.91
USB1-202ENST00000423271 ABCA10Q8WWZ4 1543 aa26.98■■□□□ 1.91
USB1-202ENST00000423271 MAGI1Q96QZ7 1491 aaPredicted RBP26.97■■□□□ 1.91
USB1-202ENST00000423271 SYNJ1O43426 1573 aa26.97■■□□□ 1.91
USB1-202ENST00000423271 PBRM1Q86U86 1689 aa26.96■■□□□ 1.91
USB1-202ENST00000423271 BIVM-ERCC5R4GMW8 1640 aa26.96■■□□□ 1.91
USB1-202ENST00000423271 WRNQ14191 1432 aaPredicted RBP eCLIP26.96■■□□□ 1.91
USB1-202ENST00000423271 GAPVD1Q14C86 1478 aa26.95■■□□□ 1.91
USB1-202ENST00000423271 TOP2BQ02880 1626 aa26.95■■□□□ 1.91
USB1-202ENST00000423271 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
USB1-202ENST00000423271 SYNJ2O15056 1496 aa26.88■■□□□ 1.89
USB1-202ENST00000423271 CHMP7Q8WUX9 453 aaPredicted RBP26.88■■□□□ 1.89
USB1-202ENST00000423271 CLASP1Q7Z460 1538 aa26.85■■□□□ 1.89
USB1-202ENST00000423271 ARAP1Q96P48 1450 aa26.78■■□□□ 1.88
USB1-202ENST00000423271 CYB5RLQ6IPT4 315 aa26.74■■□□□ 1.87
USB1-202ENST00000423271 ADAMTS12P58397 1594 aa26.72■■□□□ 1.87
USB1-202ENST00000423271 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
USB1-202ENST00000423271 ERICH3Q5RHP9 1530 aa26.64■■□□□ 1.85
USB1-202ENST00000423271 FHAD1B1AJZ9 1412 aa26.61■■□□□ 1.85
USB1-202ENST00000423271 CEP170Q5SW79 1584 aa26.59■■□□□ 1.85
USB1-202ENST00000423271 NUP160Q12769 1436 aa26.56■■□□□ 1.84
USB1-202ENST00000423271 ERCC6L2Q5T890 1561 aa26.48■■□□□ 1.83
USB1-202ENST00000423271 SHROOM2Q13796 1616 aa26.43■■□□□ 1.82
USB1-202ENST00000423271 KIF27Q86VH2 1401 aa26.4■■□□□ 1.82
USB1-202ENST00000423271 IGF1RP08069 1367 aa26.36■■□□□ 1.81
USB1-202ENST00000423271 RUSC2Q8N2Y8 1516 aa26.34■■□□□ 1.81
USB1-202ENST00000423271 TRHP20396 242 aaPredicted RBP26.34■■□□□ 1.81
USB1-202ENST00000423271 CUL7Q14999 1698 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms