RNA–Protein interactions for RNA: ENST00000372276.7

CD40-201, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-201ENST00000372276 NISCHQ9Y2I1 1504 aa38.4■■■■□ 3.74
CD40-201ENST00000372276 CCDC180Q9P1Z9 1646 aa33.08■■■□□ 2.89
CD40-201ENST00000372276 ZCCHC6Q5VYS8 1495 aaKnown RBP32.44■■■□□ 2.78
CD40-201ENST00000372276 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
CD40-201ENST00000372276 DCAF1Q9Y4B6 1507 aa31.85■■■□□ 2.69
CD40-201ENST00000372276 ABCC9O60706 1549 aa31.73■■■□□ 2.67
CD40-201ENST00000372276 DCAF8L2P0C7V8 631 aa31.36■■■□□ 2.61
CD40-201ENST00000372276 SUPT5HO00267 1087 aaKnown RBP31.21■■■□□ 2.59
CD40-201ENST00000372276 MYO15BQ96JP2 1530 aa31.15■■■□□ 2.58
CD40-201ENST00000372276 NACADO15069 1562 aa30.67■■■□□ 2.5
CD40-201ENST00000372276 RB1CC1Q8TDY2 1594 aa30.63■■■□□ 2.49
CD40-201ENST00000372276 CHIC1Q5VXU3 224 aa30.44■■■□□ 2.46
CD40-201ENST00000372276 SCRIBQ14160 1630 aa30.43■■■□□ 2.46
CD40-201ENST00000372276 RSF1Q96T23 1441 aaPredicted RBP30.14■■■□□ 2.42
CD40-201ENST00000372276 UNC13AQ9UPW8 1703 aa29.88■■■□□ 2.37
CD40-201ENST00000372276 BICRAQ9NZM4 1560 aa29.71■■■□□ 2.35
CD40-201ENST00000372276 PABPN1Q86U42 306 aaKnown RBP eCLIP29.69■■■□□ 2.34
CD40-201ENST00000372276 CECR2Q9BXF3 1484 aa29.67■■■□□ 2.34
CD40-201ENST00000372276 MROH2BQ7Z745 1585 aa29.63■■■□□ 2.33
CD40-201ENST00000372276 BAZ1AQ9NRL2 1556 aaPredicted RBP29.62■■■□□ 2.33
CD40-201ENST00000372276 WIZO95785 1651 aa29.43■■■□□ 2.3
CD40-201ENST00000372276 TRIM41Q8WV44 630 aa29.38■■■□□ 2.29
CD40-201ENST00000372276 SMARCA4P51532 1647 aa29.3■■■□□ 2.28
CD40-201ENST00000372276 TOP2AP11388 1531 aaKnown RBP29.24■■■□□ 2.27
CD40-201ENST00000372276 LOC105371045A0A1W2PR82 267 aa29.22■■■□□ 2.27
CD40-201ENST00000372276 EIF4G1Q04637 1599 aaKnown RBP29.06■■■□□ 2.24
CD40-201ENST00000372276 HRCP23327 699 aa28.99■■■□□ 2.23
CD40-201ENST00000372276 DNAJC5BQ9UF47 199 aa28.98■■■□□ 2.23
CD40-201ENST00000372276 PCGF6Q9BYE7 350 aa28.97■■■□□ 2.23
CD40-201ENST00000372276 PEG3Q9GZU2 1588 aa28.96■■■□□ 2.23
CD40-201ENST00000372276 SMARCA2P51531 1590 aa28.95■■■□□ 2.23
CD40-201ENST00000372276 CCDC88BA6NC98 1476 aa28.93■■■□□ 2.22
CD40-201ENST00000372276 TRIM26Q12899 539 aaPredicted RBP28.86■■■□□ 2.21
CD40-201ENST00000372276 FAM9AQ8IZU1 332 aaPredicted RBP28.73■■■□□ 2.19
CD40-201ENST00000372276 CC2D2AQ9P2K1 1620 aa28.72■■■□□ 2.19
CD40-201ENST00000372276 EEA1Q15075 1411 aa28.62■■■□□ 2.17
CD40-201ENST00000372276 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
CD40-201ENST00000372276 ABCC8Q09428 1581 aa28.54■■■□□ 2.16
CD40-201ENST00000372276 BAZ1BQ9UIG0 1483 aaKnown RBP28.51■■■□□ 2.15
CD40-201ENST00000372276 WRNQ14191 1432 aaPredicted RBP eCLIP28.38■■■□□ 2.13
CD40-201ENST00000372276 ZEB1P37275 1124 aaPredicted RBP28.36■■■□□ 2.13
CD40-201ENST00000372276 NCAPD3P42695 1498 aa28.32■■■□□ 2.12
CD40-201ENST00000372276 TNIKQ9UKE5 1360 aa28.29■■■□□ 2.12
CD40-201ENST00000372276 CSRNP3Q8WYN3 585 aa28.28■■■□□ 2.12
CD40-201ENST00000372276 HMGXB3Q12766 1538 aa28.27■■■□□ 2.12
CD40-201ENST00000372276 SOGA1O94964 1423 aa28.24■■■□□ 2.11
CD40-201ENST00000372276 EHMT2Q96KQ7 1210 aa28.19■■■□□ 2.1
CD40-201ENST00000372276 GOLGA3Q08378 1498 aa28.17■■■□□ 2.1
CD40-201ENST00000372276 SYNJ1O43426 1573 aa28.13■■■□□ 2.09
CD40-201ENST00000372276 CEP162Q5TB80 1403 aa28.12■■■□□ 2.09
CD40-201ENST00000372276 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
CD40-201ENST00000372276 KIF21BO75037 1637 aa28.08■■■□□ 2.09
CD40-201ENST00000372276 RUSC2Q8N2Y8 1516 aa28.03■■■□□ 2.08
CD40-201ENST00000372276 TOP2BQ02880 1626 aa28.03■■■□□ 2.08
CD40-201ENST00000372276 BIVM-ERCC5R4GMW8 1640 aa27.98■■■□□ 2.07
CD40-201ENST00000372276 UBTFP17480 764 aaKnown RBP27.98■■■□□ 2.07
CD40-201ENST00000372276 PPARGC1BQ86YN6 1023 aaKnown RBP27.95■■■□□ 2.06
CD40-201ENST00000372276 CFTRP13569 1480 aa27.85■■■□□ 2.05
CD40-201ENST00000372276 PRDM2Q13029 1718 aa27.77■■■□□ 2.04
CD40-201ENST00000372276 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
CD40-201ENST00000372276 CLIP1P30622 1438 aa27.72■■■□□ 2.03
CD40-201ENST00000372276 CUX1P39880 1505 aa27.66■■■□□ 2.02
CD40-201ENST00000372276 RAPGEF2Q9Y4G8 1499 aa27.64■■■□□ 2.02
CD40-201ENST00000372276 VPS8Q8N3P4 1428 aa27.63■■■□□ 2.01
CD40-201ENST00000372276 PRXQ9BXM0 1461 aa27.63■■■□□ 2.01
CD40-201ENST00000372276 KIF27Q86VH2 1401 aa27.62■■■□□ 2.01
CD40-201ENST00000372276 CADPSQ9ULU8 1353 aa27.57■■■□□ 2
CD40-201ENST00000372276 NESP48681 1621 aa27.52■■■□□ 2
CD40-201ENST00000372276 CCER1Q8TC90 406 aaPredicted RBP27.52■■■□□ 2
CD40-201ENST00000372276 LAMC3Q9Y6N6 1575 aa27.51■■□□□ 1.99
CD40-201ENST00000372276 APLP2Q06481 763 aa27.51■■□□□ 1.99
CD40-201ENST00000372276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.39■■□□□ 1.98
CD40-201ENST00000372276 ERCC6Q03468 1493 aa27.34■■□□□ 1.97
CD40-201ENST00000372276 PDS5BQ9NTI5 1447 aa27.33■■□□□ 1.97
CD40-201ENST00000372276 TTBK1Q5TCY1 1321 aaPredicted RBP27.26■■□□□ 1.95
CD40-201ENST00000372276 CUX2O14529 1486 aa27.26■■□□□ 1.95
CD40-201ENST00000372276 ARAP1Q96P48 1450 aa27.25■■□□□ 1.95
CD40-201ENST00000372276 FANCD2Q9BXW9 1451 aa27.24■■□□□ 1.95
CD40-201ENST00000372276 FGD5Q6ZNL6 1462 aa27.23■■□□□ 1.95
CD40-201ENST00000372276 IGF1RP08069 1367 aa27.23■■□□□ 1.95
CD40-201ENST00000372276 DNMBPQ6XZF7 1577 aa27.19■■□□□ 1.94
CD40-201ENST00000372276 KIF21AQ7Z4S6 1674 aa27.17■■□□□ 1.94
CD40-201ENST00000372276 CARMIL1Q5VZK9 1371 aa27.13■■□□□ 1.93
CD40-201ENST00000372276 ARHGAP35Q9NRY4 1499 aa27.1■■□□□ 1.93
CD40-201ENST00000372276 ABCA10Q8WWZ4 1543 aa27.08■■□□□ 1.93
CD40-201ENST00000372276 MAP3K1Q13233 1512 aa27.07■■□□□ 1.92
CD40-201ENST00000372276 THOC2Q8NI27 1593 aaKnown RBP27.07■■□□□ 1.92
CD40-201ENST00000372276 RANGAP1P46060 587 aaPredicted RBP27.07■■□□□ 1.92
CD40-201ENST00000372276 TOPBP1Q92547 1522 aa27.04■■□□□ 1.92
CD40-201ENST00000372276 MRC2Q9UBG0 1479 aa27.02■■□□□ 1.92
CD40-201ENST00000372276 CLSPNQ9HAW4 1339 aa27■■□□□ 1.91
CD40-201ENST00000372276 HNRNPUL2Q1KMD3 747 aaKnown RBP26.99■■□□□ 1.91
CD40-201ENST00000372276 CUL7Q14999 1698 aa26.98■■□□□ 1.91
CD40-201ENST00000372276 RRBP1Q9P2E9 1410 aaKnown RBP26.97■■□□□ 1.91
CD40-201ENST00000372276 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
CD40-201ENST00000372276 FHAD1B1AJZ9 1412 aa26.94■■□□□ 1.9
CD40-201ENST00000372276 WDR62O43379 1518 aa26.93■■□□□ 1.9
CD40-201ENST00000372276 EFCAB5A4FU69 1503 aa26.88■■□□□ 1.89
CD40-201ENST00000372276 KANK4Q5T7N3 995 aaPredicted RBP26.87■■□□□ 1.89
CD40-201ENST00000372276 URB2Q14146 1524 aaKnown RBP26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms