Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 AL391005.1-201ENST00000623953 2435 ntBASIC17.18■□□□□ 0.34
APOEP02649 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.18■□□□□ 0.34
APOEP02649 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
APOEP02649 AC008894.3-201ENST00000624324 3103 ntBASIC17.18■□□□□ 0.34
APOEP02649 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 AL592309.1-201ENST00000443127 649 ntBASIC17.18■□□□□ 0.34
APOEP02649 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.18■□□□□ 0.34
APOEP02649 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.18■□□□□ 0.34
APOEP02649 AC243562.1-201ENST00000560672 389 ntBASIC17.18■□□□□ 0.34
APOEP02649 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.18■□□□□ 0.34
APOEP02649 AP001160.2-201ENST00000596071 487 ntBASIC17.18■□□□□ 0.34
APOEP02649 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
APOEP02649 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.18■□□□□ 0.34
APOEP02649 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
APOEP02649 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
APOEP02649 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.17■□□□□ 0.34
APOEP02649 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 AC004461.1-201ENST00000412461 403 ntBASIC17.17■□□□□ 0.34
APOEP02649 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.17■□□□□ 0.34
APOEP02649 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.17■□□□□ 0.34
APOEP02649 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.17■□□□□ 0.34
APOEP02649 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 GGT4P-201ENST00000623672 1708 ntBASIC17.17■□□□□ 0.34
APOEP02649 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
APOEP02649 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
APOEP02649 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
APOEP02649 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.16■□□□□ 0.34
APOEP02649 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.16■□□□□ 0.34
APOEP02649 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.16■□□□□ 0.34
APOEP02649 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.16■□□□□ 0.34
APOEP02649 AC005237.2-201ENST00000434368 219 ntBASIC17.16■□□□□ 0.34
APOEP02649 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
APOEP02649 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.16■□□□□ 0.34
APOEP02649 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.16■□□□□ 0.34
APOEP02649 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 AC008267.7-201ENST00000624570 1194 ntBASIC17.16■□□□□ 0.34
APOEP02649 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms