RNA–Protein interactions for RNA: ENST00000518882.2

PCDHGA11-202, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDHGA11, Length 2,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-202ENST00000518882 NISCHQ9Y2I1 1504 aa33.89■■■■□ 3.02
PCDHGA11-202ENST00000518882 SHROOM4Q9ULL8 1493 aa29.1■■■□□ 2.25
PCDHGA11-202ENST00000518882 ZCCHC6Q5VYS8 1495 aaKnown RBP28.73■■■□□ 2.19
PCDHGA11-202ENST00000518882 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
PCDHGA11-202ENST00000518882 SUPT5HO00267 1087 aaKnown RBP28.6■■■□□ 2.17
PCDHGA11-202ENST00000518882 MYO15BQ96JP2 1530 aa27.99■■■□□ 2.07
PCDHGA11-202ENST00000518882 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
PCDHGA11-202ENST00000518882 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
PCDHGA11-202ENST00000518882 DCAF1Q9Y4B6 1507 aa27.78■■■□□ 2.04
PCDHGA11-202ENST00000518882 HRCP23327 699 aa27.47■■□□□ 1.99
PCDHGA11-202ENST00000518882 PCGF6Q9BYE7 350 aa27.3■■□□□ 1.96
PCDHGA11-202ENST00000518882 ABCC9O60706 1549 aa27.18■■□□□ 1.94
PCDHGA11-202ENST00000518882 LOC105371045A0A1W2PR82 267 aa27.15■■□□□ 1.94
PCDHGA11-202ENST00000518882 SCRIBQ14160 1630 aa27■■□□□ 1.91
PCDHGA11-202ENST00000518882 PPARGC1BQ86YN6 1023 aaKnown RBP26.92■■□□□ 1.9
PCDHGA11-202ENST00000518882 RSF1Q96T23 1441 aaPredicted RBP26.91■■□□□ 1.9
PCDHGA11-202ENST00000518882 RB1CC1Q8TDY2 1594 aa26.74■■□□□ 1.87
PCDHGA11-202ENST00000518882 TRIM26Q12899 539 aaPredicted RBP26.69■■□□□ 1.86
PCDHGA11-202ENST00000518882 TRIM41Q8WV44 630 aa26.59■■□□□ 1.85
PCDHGA11-202ENST00000518882 CECR2Q9BXF3 1484 aa26.47■■□□□ 1.83
PCDHGA11-202ENST00000518882 NACADO15069 1562 aa26.45■■□□□ 1.83
PCDHGA11-202ENST00000518882 FAM9AQ8IZU1 332 aaPredicted RBP26.42■■□□□ 1.82
PCDHGA11-202ENST00000518882 MROH2BQ7Z745 1585 aa26.4■■□□□ 1.82
PCDHGA11-202ENST00000518882 WIZO95785 1651 aa26.31■■□□□ 1.8
PCDHGA11-202ENST00000518882 EHMT2Q96KQ7 1210 aa26.22■■□□□ 1.79
PCDHGA11-202ENST00000518882 ZEB1P37275 1124 aaPredicted RBP26.16■■□□□ 1.78
PCDHGA11-202ENST00000518882 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
PCDHGA11-202ENST00000518882 EIF4G1Q04637 1599 aaKnown RBP26.07■■□□□ 1.76
PCDHGA11-202ENST00000518882 TOP2AP11388 1531 aaKnown RBP25.83■■□□□ 1.73
PCDHGA11-202ENST00000518882 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
PCDHGA11-202ENST00000518882 SMARCA4P51532 1647 aa25.79■■□□□ 1.72
PCDHGA11-202ENST00000518882 UNC13AQ9UPW8 1703 aa25.77■■□□□ 1.72
PCDHGA11-202ENST00000518882 CCDC88BA6NC98 1476 aa25.74■■□□□ 1.71
PCDHGA11-202ENST00000518882 SMARCA2P51531 1590 aa25.73■■□□□ 1.71
PCDHGA11-202ENST00000518882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.63■■□□□ 1.69
PCDHGA11-202ENST00000518882 SOGA1O94964 1423 aa25.56■■□□□ 1.68
PCDHGA11-202ENST00000518882 WRNQ14191 1432 aaPredicted RBP eCLIP25.56■■□□□ 1.68
PCDHGA11-202ENST00000518882 CEP162Q5TB80 1403 aa25.54■■□□□ 1.68
PCDHGA11-202ENST00000518882 CCER1Q8TC90 406 aaPredicted RBP25.53■■□□□ 1.68
PCDHGA11-202ENST00000518882 SCAF1Q9H7N4 1312 aaKnown RBP25.49■■□□□ 1.67
PCDHGA11-202ENST00000518882 RUSC2Q8N2Y8 1516 aa25.46■■□□□ 1.67
PCDHGA11-202ENST00000518882 TTBK1Q5TCY1 1321 aaPredicted RBP25.44■■□□□ 1.66
PCDHGA11-202ENST00000518882 TNIKQ9UKE5 1360 aa25.44■■□□□ 1.66
PCDHGA11-202ENST00000518882 EEA1Q15075 1411 aa25.38■■□□□ 1.65
PCDHGA11-202ENST00000518882 CSRNP3Q8WYN3 585 aa25.37■■□□□ 1.65
PCDHGA11-202ENST00000518882 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
PCDHGA11-202ENST00000518882 UBTFP17480 764 aaKnown RBP25.29■■□□□ 1.64
PCDHGA11-202ENST00000518882 PABPN1Q86U42 306 aaKnown RBP eCLIP25.29■■□□□ 1.64
PCDHGA11-202ENST00000518882 GOLGA3Q08378 1498 aa25.27■■□□□ 1.64
PCDHGA11-202ENST00000518882 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
PCDHGA11-202ENST00000518882 SYNJ1O43426 1573 aa25.2■■□□□ 1.63
PCDHGA11-202ENST00000518882 DIEXFQ68CQ4 756 aaKnown RBP25.17■■□□□ 1.62
PCDHGA11-202ENST00000518882 ACIN1Q9UKV3 1341 aaKnown RBP25.13■■□□□ 1.61
PCDHGA11-202ENST00000518882 NEUROD1Q13562 356 aa25.11■■□□□ 1.61
PCDHGA11-202ENST00000518882 KIF21BO75037 1637 aa25.11■■□□□ 1.61
PCDHGA11-202ENST00000518882 CEP164Q9UPV0 1460 aa25.09■■□□□ 1.61
PCDHGA11-202ENST00000518882 PELP1Q8IZL8 1130 aaKnown RBP25.09■■□□□ 1.61
PCDHGA11-202ENST00000518882 ATAD2BQ9ULI0 1458 aa25.04■■□□□ 1.6
PCDHGA11-202ENST00000518882 CLIP1P30622 1438 aa24.99■■□□□ 1.59
PCDHGA11-202ENST00000518882 BAZ1BQ9UIG0 1483 aaKnown RBP24.97■■□□□ 1.59
PCDHGA11-202ENST00000518882 RAPGEF2Q9Y4G8 1499 aa24.93■■□□□ 1.58
PCDHGA11-202ENST00000518882 VPS8Q8N3P4 1428 aa24.92■■□□□ 1.58
PCDHGA11-202ENST00000518882 ZNF316A6NFI3 1004 aaPredicted RBP24.92■■□□□ 1.58
PCDHGA11-202ENST00000518882 HNRNPUL2Q1KMD3 747 aaKnown RBP24.9■■□□□ 1.58
PCDHGA11-202ENST00000518882 CENPBP07199 599 aaPredicted RBP24.88■■□□□ 1.57
PCDHGA11-202ENST00000518882 GTF3C3Q9Y5Q9 886 aa24.86■■□□□ 1.57
PCDHGA11-202ENST00000518882 TOP2BQ02880 1626 aa24.84■■□□□ 1.57
PCDHGA11-202ENST00000518882 RANGAP1P46060 587 aaPredicted RBP24.77■■□□□ 1.56
PCDHGA11-202ENST00000518882 BIVM-ERCC5R4GMW8 1640 aa24.76■■□□□ 1.55
PCDHGA11-202ENST00000518882 APLP2Q06481 763 aa24.72■■□□□ 1.55
PCDHGA11-202ENST00000518882 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
PCDHGA11-202ENST00000518882 MIER1Q8N108 512 aa24.64■■□□□ 1.53
PCDHGA11-202ENST00000518882 PRXQ9BXM0 1461 aa24.63■■□□□ 1.53
PCDHGA11-202ENST00000518882 ARAP1Q96P48 1450 aa24.61■■□□□ 1.53
PCDHGA11-202ENST00000518882 YTHDC1Q96MU7 727 aaKnown RBP24.61■■□□□ 1.53
PCDHGA11-202ENST00000518882 CUX1P39880 1505 aa24.55■■□□□ 1.52
PCDHGA11-202ENST00000518882 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
PCDHGA11-202ENST00000518882 KANK4Q5T7N3 995 aaPredicted RBP24.5■■□□□ 1.51
PCDHGA11-202ENST00000518882 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
PCDHGA11-202ENST00000518882 DHX57Q6P158 1386 aaKnown RBP24.48■■□□□ 1.51
PCDHGA11-202ENST00000518882 KIF27Q86VH2 1401 aa24.42■■□□□ 1.5
PCDHGA11-202ENST00000518882 CLSPNQ9HAW4 1339 aa24.41■■□□□ 1.5
PCDHGA11-202ENST00000518882 RRBP1Q9P2E9 1410 aaKnown RBP24.38■■□□□ 1.49
PCDHGA11-202ENST00000518882 CFTRP13569 1480 aa24.37■■□□□ 1.49
PCDHGA11-202ENST00000518882 ARHGAP35Q9NRY4 1499 aa24.35■■□□□ 1.49
PCDHGA11-202ENST00000518882 CUX2O14529 1486 aa24.28■■□□□ 1.48
PCDHGA11-202ENST00000518882 PRDM2Q13029 1718 aa24.28■■□□□ 1.48
PCDHGA11-202ENST00000518882 CCNB3Q8WWL7 1395 aa24.25■■□□□ 1.47
PCDHGA11-202ENST00000518882 IGF1RP08069 1367 aa24.17■■□□□ 1.46
PCDHGA11-202ENST00000518882 ITGAEP38570 1179 aa24.15■■□□□ 1.46
PCDHGA11-202ENST00000518882 TIAM1Q13009 1591 aa24.14■■□□□ 1.45
PCDHGA11-202ENST00000518882 RAB3GAP2Q9H2M9 1393 aa24.08■■□□□ 1.45
PCDHGA11-202ENST00000518882 MAPKBP1O60336 1514 aa24.07■■□□□ 1.44
PCDHGA11-202ENST00000518882 MAP3K1Q13233 1512 aa24.07■■□□□ 1.44
PCDHGA11-202ENST00000518882 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
PCDHGA11-202ENST00000518882 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
PCDHGA11-202ENST00000518882 CADPSQ9ULU8 1353 aa24.02■■□□□ 1.44
PCDHGA11-202ENST00000518882 LRRC9Q6ZRR7 1453 aa24.02■■□□□ 1.44
PCDHGA11-202ENST00000518882 PHLDB1Q86UU1 1377 aa23.99■■□□□ 1.43
PCDHGA11-202ENST00000518882 CFAP43Q8NDM7 1665 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms