RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 NISCHQ9Y2I1 1504 aa39.95■■■■□ 3.99
CXCL1-201ENST00000395761 CCDC180Q9P1Z9 1646 aa35.37■■■■□ 3.25
CXCL1-201ENST00000395761 ABCC9O60706 1549 aa34.62■■■■□ 3.13
CXCL1-201ENST00000395761 DCAF8L2P0C7V8 631 aa33.44■■■□□ 2.94
CXCL1-201ENST00000395761 ZCCHC6Q5VYS8 1495 aaKnown RBP33.29■■■□□ 2.92
CXCL1-201ENST00000395761 NACADO15069 1562 aa33.26■■■□□ 2.92
CXCL1-201ENST00000395761 RB1CC1Q8TDY2 1594 aa33.26■■■□□ 2.92
CXCL1-201ENST00000395761 MYO15BQ96JP2 1530 aa33.08■■■□□ 2.89
CXCL1-201ENST00000395761 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
CXCL1-201ENST00000395761 UNC13AQ9UPW8 1703 aa32.51■■■□□ 2.8
CXCL1-201ENST00000395761 PABPN1Q86U42 306 aaKnown RBP eCLIP32.44■■■□□ 2.78
CXCL1-201ENST00000395761 SCRIBQ14160 1630 aa32.37■■■□□ 2.77
CXCL1-201ENST00000395761 BICRAQ9NZM4 1560 aa32.31■■■□□ 2.76
CXCL1-201ENST00000395761 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
CXCL1-201ENST00000395761 DNAJC5BQ9UF47 199 aa31.75■■■□□ 2.67
CXCL1-201ENST00000395761 EIF4G1Q04637 1599 aaKnown RBP31.42■■■□□ 2.62
CXCL1-201ENST00000395761 CC2D2AQ9P2K1 1620 aa31.27■■■□□ 2.6
CXCL1-201ENST00000395761 CECR2Q9BXF3 1484 aa31.18■■■□□ 2.58
CXCL1-201ENST00000395761 SMARCA4P51532 1647 aa30.95■■■□□ 2.55
CXCL1-201ENST00000395761 BAZ1AQ9NRL2 1556 aaPredicted RBP30.92■■■□□ 2.54
CXCL1-201ENST00000395761 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
CXCL1-201ENST00000395761 ATAD2BQ9ULI0 1458 aa30.79■■■□□ 2.52
CXCL1-201ENST00000395761 NCAPD3P42695 1498 aa30.74■■■□□ 2.51
CXCL1-201ENST00000395761 SMARCA2P51531 1590 aa30.69■■■□□ 2.5
CXCL1-201ENST00000395761 PEG3Q9GZU2 1588 aa30.62■■■□□ 2.49
CXCL1-201ENST00000395761 HMGXB3Q12766 1538 aa30.54■■■□□ 2.48
CXCL1-201ENST00000395761 RSF1Q96T23 1441 aaPredicted RBP30.53■■■□□ 2.48
CXCL1-201ENST00000395761 BAZ1BQ9UIG0 1483 aaKnown RBP30.51■■■□□ 2.48
CXCL1-201ENST00000395761 WIZO95785 1651 aa30.49■■■□□ 2.47
CXCL1-201ENST00000395761 TOP2AP11388 1531 aaKnown RBP30.13■■■□□ 2.41
CXCL1-201ENST00000395761 NESP48681 1621 aa30.01■■■□□ 2.39
CXCL1-201ENST00000395761 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
CXCL1-201ENST00000395761 CADPSQ9ULU8 1353 aa29.87■■■□□ 2.37
CXCL1-201ENST00000395761 LAMC3Q9Y6N6 1575 aa29.85■■■□□ 2.37
CXCL1-201ENST00000395761 CCDC88BA6NC98 1476 aa29.84■■■□□ 2.37
CXCL1-201ENST00000395761 ERCC6Q03468 1493 aa29.78■■■□□ 2.36
CXCL1-201ENST00000395761 CFTRP13569 1480 aa29.69■■■□□ 2.34
CXCL1-201ENST00000395761 PDS5BQ9NTI5 1447 aa29.68■■■□□ 2.34
CXCL1-201ENST00000395761 KIF21AQ7Z4S6 1674 aa29.58■■■□□ 2.33
CXCL1-201ENST00000395761 FANCD2Q9BXW9 1451 aa29.51■■■□□ 2.31
CXCL1-201ENST00000395761 THOC2Q8NI27 1593 aaKnown RBP29.44■■■□□ 2.3
CXCL1-201ENST00000395761 CEP164Q9UPV0 1460 aa29.43■■■□□ 2.3
CXCL1-201ENST00000395761 CUX2O14529 1486 aa29.38■■■□□ 2.29
CXCL1-201ENST00000395761 PRDM2Q13029 1718 aa29.38■■■□□ 2.29
CXCL1-201ENST00000395761 MRC2Q9UBG0 1479 aa29.37■■■□□ 2.29
CXCL1-201ENST00000395761 WDR62O43379 1518 aa29.26■■■□□ 2.27
CXCL1-201ENST00000395761 URB2Q14146 1524 aaKnown RBP29.22■■■□□ 2.27
CXCL1-201ENST00000395761 TOPBP1Q92547 1522 aa29.05■■■□□ 2.24
CXCL1-201ENST00000395761 ABCC8Q09428 1581 aa29■■■□□ 2.23
CXCL1-201ENST00000395761 DNMBPQ6XZF7 1577 aa29■■■□□ 2.23
CXCL1-201ENST00000395761 CUX1P39880 1505 aa28.89■■■□□ 2.22
CXCL1-201ENST00000395761 POLA1P09884 1462 aaPredicted RBP28.82■■■□□ 2.2
CXCL1-201ENST00000395761 IFT140Q96RY7 1462 aa28.81■■■□□ 2.2
CXCL1-201ENST00000395761 FGD5Q6ZNL6 1462 aa28.78■■■□□ 2.2
CXCL1-201ENST00000395761 WRNQ14191 1432 aaPredicted RBP eCLIP28.75■■■□□ 2.19
CXCL1-201ENST00000395761 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
CXCL1-201ENST00000395761 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
CXCL1-201ENST00000395761 SOGA1O94964 1423 aa28.73■■■□□ 2.19
CXCL1-201ENST00000395761 TARBP1Q13395 1621 aaKnown RBP28.71■■■□□ 2.19
CXCL1-201ENST00000395761 SYNJ1O43426 1573 aa28.68■■■□□ 2.18
CXCL1-201ENST00000395761 TOP2BQ02880 1626 aa28.65■■■□□ 2.18
CXCL1-201ENST00000395761 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
CXCL1-201ENST00000395761 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.17
CXCL1-201ENST00000395761 TDRD9Q8NDG6 1382 aaKnown RBP28.58■■■□□ 2.17
CXCL1-201ENST00000395761 EIF4G3O43432 1585 aaKnown RBP28.55■■■□□ 2.16
CXCL1-201ENST00000395761 ABCA10Q8WWZ4 1543 aa28.48■■■□□ 2.15
CXCL1-201ENST00000395761 WDR97A6NE52 1622 aa28.47■■■□□ 2.15
CXCL1-201ENST00000395761 DNAJC5Q9H3Z4 198 aa28.42■■■□□ 2.14
CXCL1-201ENST00000395761 GAPVD1Q14C86 1478 aa28.37■■■□□ 2.13
CXCL1-201ENST00000395761 GRIN2BQ13224 1484 aa28.34■■■□□ 2.13
CXCL1-201ENST00000395761 ABCA5Q8WWZ7 1642 aa28.33■■■□□ 2.13
CXCL1-201ENST00000395761 SNAPC4Q5SXM2 1469 aa28.29■■■□□ 2.12
CXCL1-201ENST00000395761 OSCARQ8IYS5 282 aa28.27■■■□□ 2.12
CXCL1-201ENST00000395761 FBLN2P98095 1184 aa28.25■■■□□ 2.11
CXCL1-201ENST00000395761 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
CXCL1-201ENST00000395761 MAGI1Q96QZ7 1491 aaPredicted RBP28.22■■■□□ 2.11
CXCL1-201ENST00000395761 TRIM41Q8WV44 630 aa28.22■■■□□ 2.11
CXCL1-201ENST00000395761 CHD1O14646 1710 aa28.17■■■□□ 2.1
CXCL1-201ENST00000395761 CHMP7Q8WUX9 453 aaPredicted RBP28.16■■■□□ 2.1
CXCL1-201ENST00000395761 KIF27Q86VH2 1401 aa28.13■■■□□ 2.09
CXCL1-201ENST00000395761 SYNJ2O15056 1496 aa28.13■■■□□ 2.09
CXCL1-201ENST00000395761 ERICH3Q5RHP9 1530 aa28.12■■■□□ 2.09
CXCL1-201ENST00000395761 IGF1RP08069 1367 aa28.06■■■□□ 2.08
CXCL1-201ENST00000395761 ADAMTS12P58397 1594 aa28.06■■■□□ 2.08
CXCL1-201ENST00000395761 FHAD1B1AJZ9 1412 aa28.04■■■□□ 2.08
CXCL1-201ENST00000395761 CHIC1Q5VXU3 224 aa28■■■□□ 2.07
CXCL1-201ENST00000395761 RUSC2Q8N2Y8 1516 aa28■■■□□ 2.07
CXCL1-201ENST00000395761 GRIN2AQ12879 1464 aa27.97■■■□□ 2.07
CXCL1-201ENST00000395761 CLASP1Q7Z460 1538 aa27.88■■■□□ 2.05
CXCL1-201ENST00000395761 CARMIL1Q5VZK9 1371 aa27.87■■■□□ 2.05
CXCL1-201ENST00000395761 CUL7Q14999 1698 aa27.86■■■□□ 2.05
CXCL1-201ENST00000395761 NUP160Q12769 1436 aa27.85■■■□□ 2.05
CXCL1-201ENST00000395761 CEP170Q5SW79 1584 aa27.84■■■□□ 2.05
CXCL1-201ENST00000395761 ARHGEF11O15085 1522 aa27.77■■■□□ 2.04
CXCL1-201ENST00000395761 RIMBP3CA6NJZ7 1639 aa27.75■■■□□ 2.03
CXCL1-201ENST00000395761 RIMBP3BA6NNM3 1639 aa27.75■■■□□ 2.03
CXCL1-201ENST00000395761 RIMBP3Q9UFD9 1639 aa27.75■■■□□ 2.03
CXCL1-201ENST00000395761 RAPGEF2Q9Y4G8 1499 aa27.7■■■□□ 2.02
CXCL1-201ENST00000395761 FAM9AQ8IZU1 332 aaPredicted RBP27.69■■■□□ 2.02
CXCL1-201ENST00000395761 CSRNP3Q8WYN3 585 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 723.7 ms