Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 TMED1-207ENST00000591695 809 ntTSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 AC046185.3-201ENST00000623228 1824 ntBASIC11.62□□□□□ -0.55
CKS1BP61024 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
CKS1BP61024 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CKS1BP61024 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC11.61□□□□□ -0.55
CKS1BP61024 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC11.61□□□□□ -0.55
CKS1BP61024 AP003733.1-201ENST00000491725 852 ntBASIC11.61□□□□□ -0.55
CKS1BP61024 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 CD81-212ENST00000526072 1172 ntTSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
CKS1BP61024 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC11.61□□□□□ -0.55
CKS1BP61024 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 RER1-203ENST00000378513 3000 ntTSL 3 BASIC11.61□□□□□ -0.55
CKS1BP61024 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CKS1BP61024 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CKS1BP61024 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CKS1BP61024 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC11.6□□□□□ -0.55
CKS1BP61024 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC11.6□□□□□ -0.55
CKS1BP61024 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CKS1BP61024 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms