Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.67■□□□□ 0.74
SSX3Q99909 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.67■□□□□ 0.74
SSX3Q99909 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.67■□□□□ 0.74
SSX3Q99909 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SSX3Q99909 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX3Q99909 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SSX3Q99909 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SSX3Q99909 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SSX3Q99909 DUX4L18-201ENST00000553347 1267 ntBASIC19.66■□□□□ 0.74
SSX3Q99909 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.66■□□□□ 0.74
SSX3Q99909 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SSX3Q99909 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.66■□□□□ 0.74
SSX3Q99909 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SSX3Q99909 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX3Q99909 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.65■□□□□ 0.74
SSX3Q99909 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.65■□□□□ 0.74
SSX3Q99909 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SSX3Q99909 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX3Q99909 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX3Q99909 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX3Q99909 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SSX3Q99909 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SSX3Q99909 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX3Q99909 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.64■□□□□ 0.73
SSX3Q99909 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
SSX3Q99909 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SSX3Q99909 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SSX3Q99909 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX3Q99909 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX3Q99909 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX3Q99909 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.64■□□□□ 0.73
SSX3Q99909 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SSX3Q99909 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.63■□□□□ 0.73
SSX3Q99909 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX3Q99909 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SSX3Q99909 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX3Q99909 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SSX3Q99909 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX3Q99909 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX3Q99909 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX3Q99909 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX3Q99909 DUX4L9-201ENST00000449051 1259 ntBASIC19.62■□□□□ 0.73
SSX3Q99909 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.61■□□□□ 0.73
SSX3Q99909 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.61■□□□□ 0.73
SSX3Q99909 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX3Q99909 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SSX3Q99909 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SSX3Q99909 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SSX3Q99909 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 AC018755.3-202ENST00000596210 929 ntBASIC19.6■□□□□ 0.73
SSX3Q99909 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.6■□□□□ 0.73
SSX3Q99909 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX3Q99909 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX3Q99909 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX3Q99909 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX3Q99909 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX3Q99909 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
SSX3Q99909 SPCS2P3-201ENST00000500401 656 ntBASIC19.59■□□□□ 0.73
SSX3Q99909 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SSX3Q99909 AC142472.1-201ENST00000612013 1741 ntBASIC19.59■□□□□ 0.73
SSX3Q99909 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX3Q99909 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.58■□□□□ 0.73
SSX3Q99909 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX3Q99909 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX3Q99909 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX3Q99909 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX3Q99909 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX3Q99909 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX3Q99909 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.58■□□□□ 0.72
SSX3Q99909 MIR6765-201ENST00000614092 87 ntBASIC19.58■□□□□ 0.72
SSX3Q99909 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.58■□□□□ 0.72
SSX3Q99909 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.58■□□□□ 0.72
SSX3Q99909 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SSX3Q99909 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX3Q99909 AP004609.3-201ENST00000610705 1884 ntBASIC19.58■□□□□ 0.72
SSX3Q99909 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SSX3Q99909 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SSX3Q99909 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms