Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.85■□□□□ 0.13
MSX2P35548 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSX2P35548 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSX2P35548 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.85■□□□□ 0.13
MSX2P35548 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 NFIC-211ENST00000641145 8399 ntBASIC15.84■□□□□ 0.13
MSX2P35548 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.84■□□□□ 0.13
MSX2P35548 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC15.84■□□□□ 0.13
MSX2P35548 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 AC087499.1-201ENST00000418141 1075 ntBASIC15.84■□□□□ 0.13
MSX2P35548 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.84■□□□□ 0.13
MSX2P35548 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.84■□□□□ 0.13
MSX2P35548 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.84■□□□□ 0.13
MSX2P35548 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
MSX2P35548 AC009533.2-201ENST00000543664 586 ntBASIC15.84■□□□□ 0.13
MSX2P35548 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 AC002310.6-201ENST00000624451 1377 ntBASIC15.84■□□□□ 0.13
MSX2P35548 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX2P35548 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX2P35548 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.84■□□□□ 0.13
MSX2P35548 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
MSX2P35548 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX2P35548 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.83■□□□□ 0.13
MSX2P35548 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.13
MSX2P35548 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX2P35548 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX2P35548 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
MSX2P35548 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 AC011467.2-201ENST00000598425 242 ntBASIC15.83■□□□□ 0.12
MSX2P35548 AC083849.1-201ENST00000615227 514 ntBASIC15.83■□□□□ 0.12
MSX2P35548 PKD1P5-201ENST00000532415 10291 ntBASIC15.83■□□□□ 0.12
MSX2P35548 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.83■□□□□ 0.12
MSX2P35548 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 AC136621.1-201ENST00000624017 2304 ntBASIC15.83■□□□□ 0.12
MSX2P35548 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms