RNA–Protein interactions for RNA: ENST00000455313.6

PDXDC1-204, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 2 BASIC

Gene PDXDC1, Length 2,183 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-204ENST00000455313 NISCHQ9Y2I1 1504 aa38.55■■■■□ 3.76
PDXDC1-204ENST00000455313 CCDC180Q9P1Z9 1646 aa33.77■■■■□ 3
PDXDC1-204ENST00000455313 ZCCHC6Q5VYS8 1495 aaKnown RBP32.36■■■□□ 2.77
PDXDC1-204ENST00000455313 ABCC9O60706 1549 aa32.11■■■□□ 2.73
PDXDC1-204ENST00000455313 DCAF1Q9Y4B6 1507 aa31.89■■■□□ 2.7
PDXDC1-204ENST00000455313 DCAF8L2P0C7V8 631 aa31.83■■■□□ 2.69
PDXDC1-204ENST00000455313 MYO15BQ96JP2 1530 aa31.6■■■□□ 2.65
PDXDC1-204ENST00000455313 NACADO15069 1562 aa31.48■■■□□ 2.63
PDXDC1-204ENST00000455313 RB1CC1Q8TDY2 1594 aa31.27■■■□□ 2.6
PDXDC1-204ENST00000455313 SHROOM4Q9ULL8 1493 aa31.24■■■□□ 2.59
PDXDC1-204ENST00000455313 SCRIBQ14160 1630 aa31.01■■■□□ 2.55
PDXDC1-204ENST00000455313 UNC13AQ9UPW8 1703 aa30.68■■■□□ 2.5
PDXDC1-204ENST00000455313 BICRAQ9NZM4 1560 aa30.35■■■□□ 2.45
PDXDC1-204ENST00000455313 PABPN1Q86U42 306 aaKnown RBP eCLIP30.19■■■□□ 2.42
PDXDC1-204ENST00000455313 CECR2Q9BXF3 1484 aa29.97■■■□□ 2.39
PDXDC1-204ENST00000455313 SUPT5HO00267 1087 aaKnown RBP29.91■■■□□ 2.38
PDXDC1-204ENST00000455313 RSF1Q96T23 1441 aaPredicted RBP29.8■■■□□ 2.36
PDXDC1-204ENST00000455313 BAZ1AQ9NRL2 1556 aaPredicted RBP29.8■■■□□ 2.36
PDXDC1-204ENST00000455313 MROH2BQ7Z745 1585 aa29.78■■■□□ 2.36
PDXDC1-204ENST00000455313 SMARCA4P51532 1647 aa29.71■■■□□ 2.35
PDXDC1-204ENST00000455313 WIZO95785 1651 aa29.54■■■□□ 2.32
PDXDC1-204ENST00000455313 EIF4G1Q04637 1599 aaKnown RBP29.46■■■□□ 2.31
PDXDC1-204ENST00000455313 PEG3Q9GZU2 1588 aa29.37■■■□□ 2.29
PDXDC1-204ENST00000455313 ATAD2BQ9ULI0 1458 aa29.26■■■□□ 2.27
PDXDC1-204ENST00000455313 SMARCA2P51531 1590 aa29.25■■■□□ 2.27
PDXDC1-204ENST00000455313 TOP2AP11388 1531 aaKnown RBP29.22■■■□□ 2.27
PDXDC1-204ENST00000455313 BAZ1BQ9UIG0 1483 aaKnown RBP29.09■■■□□ 2.25
PDXDC1-204ENST00000455313 CC2D2AQ9P2K1 1620 aa29.07■■■□□ 2.24
PDXDC1-204ENST00000455313 NCAPD3P42695 1498 aa29.04■■■□□ 2.24
PDXDC1-204ENST00000455313 HMGXB3Q12766 1538 aa29.02■■■□□ 2.24
PDXDC1-204ENST00000455313 CCDC88BA6NC98 1476 aa28.89■■■□□ 2.22
PDXDC1-204ENST00000455313 CHIC1Q5VXU3 224 aa28.51■■■□□ 2.15
PDXDC1-204ENST00000455313 DNAJC5BQ9UF47 199 aa28.5■■■□□ 2.15
PDXDC1-204ENST00000455313 CFTRP13569 1480 aa28.34■■■□□ 2.13
PDXDC1-204ENST00000455313 CADPSQ9ULU8 1353 aa28.27■■■□□ 2.12
PDXDC1-204ENST00000455313 PRDM2Q13029 1718 aa28.24■■■□□ 2.11
PDXDC1-204ENST00000455313 ABCC8Q09428 1581 aa28.24■■■□□ 2.11
PDXDC1-204ENST00000455313 TRIM41Q8WV44 630 aa28.14■■■□□ 2.09
PDXDC1-204ENST00000455313 NESP48681 1621 aa28.13■■■□□ 2.09
PDXDC1-204ENST00000455313 LAMC3Q9Y6N6 1575 aa28.12■■■□□ 2.09
PDXDC1-204ENST00000455313 WRNQ14191 1432 aaPredicted RBP eCLIP28.06■■■□□ 2.08
PDXDC1-204ENST00000455313 SYNJ1O43426 1573 aa27.99■■■□□ 2.07
PDXDC1-204ENST00000455313 FANCD2Q9BXW9 1451 aa27.98■■■□□ 2.07
PDXDC1-204ENST00000455313 TOP2BQ02880 1626 aa27.89■■■□□ 2.06
PDXDC1-204ENST00000455313 BIVM-ERCC5R4GMW8 1640 aa27.87■■■□□ 2.05
PDXDC1-204ENST00000455313 PDS5BQ9NTI5 1447 aa27.87■■■□□ 2.05
PDXDC1-204ENST00000455313 CUX1P39880 1505 aa27.87■■■□□ 2.05
PDXDC1-204ENST00000455313 CEP164Q9UPV0 1460 aa27.83■■■□□ 2.05
PDXDC1-204ENST00000455313 KIF21AQ7Z4S6 1674 aa27.82■■■□□ 2.04
PDXDC1-204ENST00000455313 DNMBPQ6XZF7 1577 aa27.7■■■□□ 2.02
PDXDC1-204ENST00000455313 URB2Q14146 1524 aaKnown RBP27.65■■■□□ 2.02
PDXDC1-204ENST00000455313 TOPBP1Q92547 1522 aa27.65■■■□□ 2.02
PDXDC1-204ENST00000455313 SOGA1O94964 1423 aa27.63■■■□□ 2.01
PDXDC1-204ENST00000455313 FAM9AQ8IZU1 332 aaPredicted RBP27.61■■■□□ 2.01
PDXDC1-204ENST00000455313 FGD5Q6ZNL6 1462 aa27.6■■■□□ 2.01
PDXDC1-204ENST00000455313 ERCC6Q03468 1493 aa27.56■■■□□ 2
PDXDC1-204ENST00000455313 MRC2Q9UBG0 1479 aa27.55■■■□□ 2
PDXDC1-204ENST00000455313 RUSC2Q8N2Y8 1516 aa27.54■■■□□ 2
PDXDC1-204ENST00000455313 EEA1Q15075 1411 aa27.52■■■□□ 2
PDXDC1-204ENST00000455313 POLA1P09884 1462 aaPredicted RBP27.51■■□□□ 1.99
PDXDC1-204ENST00000455313 WDR62O43379 1518 aa27.44■■□□□ 1.98
PDXDC1-204ENST00000455313 THOC2Q8NI27 1593 aaKnown RBP27.43■■□□□ 1.98
PDXDC1-204ENST00000455313 RAD54L2Q9Y4B4 1467 aa27.39■■□□□ 1.98
PDXDC1-204ENST00000455313 LOC105371045A0A1W2PR82 267 aa27.39■■□□□ 1.97
PDXDC1-204ENST00000455313 KIF27Q86VH2 1401 aa27.36■■□□□ 1.97
PDXDC1-204ENST00000455313 CUX2O14529 1486 aa27.36■■□□□ 1.97
PDXDC1-204ENST00000455313 CSRNP3Q8WYN3 585 aa27.35■■□□□ 1.97
PDXDC1-204ENST00000455313 ABCA10Q8WWZ4 1543 aa27.34■■□□□ 1.97
PDXDC1-204ENST00000455313 WDR97A6NE52 1622 aa27.33■■□□□ 1.96
PDXDC1-204ENST00000455313 TARBP1Q13395 1621 aaKnown RBP27.28■■□□□ 1.96
PDXDC1-204ENST00000455313 EHMT2Q96KQ7 1210 aa27.23■■□□□ 1.95
PDXDC1-204ENST00000455313 KIF21BO75037 1637 aa27.21■■□□□ 1.95
PDXDC1-204ENST00000455313 ABCA5Q8WWZ7 1642 aa27.17■■□□□ 1.94
PDXDC1-204ENST00000455313 IFT140Q96RY7 1462 aa27.17■■□□□ 1.94
PDXDC1-204ENST00000455313 GOLGA3Q08378 1498 aa27.14■■□□□ 1.94
PDXDC1-204ENST00000455313 TDRD9Q8NDG6 1382 aaKnown RBP27.14■■□□□ 1.93
PDXDC1-204ENST00000455313 PRXQ9BXM0 1461 aa27.13■■□□□ 1.93
PDXDC1-204ENST00000455313 IGF1RP08069 1367 aa27.13■■□□□ 1.93
PDXDC1-204ENST00000455313 GAPVD1Q14C86 1478 aa27.09■■□□□ 1.93
PDXDC1-204ENST00000455313 RAPGEF2Q9Y4G8 1499 aa27.09■■□□□ 1.93
PDXDC1-204ENST00000455313 ERICH3Q5RHP9 1530 aa27.07■■□□□ 1.92
PDXDC1-204ENST00000455313 ZNF608Q9ULD9 1512 aaPredicted RBP27.04■■□□□ 1.92
PDXDC1-204ENST00000455313 AQRO60306 1485 aaKnown RBP eCLIP27.01■■□□□ 1.915e-8■■■■□ 23.4
PDXDC1-204ENST00000455313 CUL7Q14999 1698 aa27■■□□□ 1.91
PDXDC1-204ENST00000455313 PBRM1Q86U86 1689 aa27■■□□□ 1.91
PDXDC1-204ENST00000455313 CARMIL1Q5VZK9 1371 aa26.99■■□□□ 1.91
PDXDC1-204ENST00000455313 EIF4G3O43432 1585 aaKnown RBP26.98■■□□□ 1.91
PDXDC1-204ENST00000455313 TNIKQ9UKE5 1360 aa26.98■■□□□ 1.91
PDXDC1-204ENST00000455313 UBTFP17480 764 aaKnown RBP26.98■■□□□ 1.91
PDXDC1-204ENST00000455313 GRIN2BQ13224 1484 aa26.92■■□□□ 1.9
PDXDC1-204ENST00000455313 CEP162Q5TB80 1403 aa26.85■■□□□ 1.89
PDXDC1-204ENST00000455313 ADAMTS12P58397 1594 aa26.84■■□□□ 1.89
PDXDC1-204ENST00000455313 FHAD1B1AJZ9 1412 aa26.79■■□□□ 1.88
PDXDC1-204ENST00000455313 SNAPC4Q5SXM2 1469 aa26.78■■□□□ 1.88
PDXDC1-204ENST00000455313 MAGI1Q96QZ7 1491 aaPredicted RBP26.73■■□□□ 1.87
PDXDC1-204ENST00000455313 CLIP1P30622 1438 aa26.69■■□□□ 1.86
PDXDC1-204ENST00000455313 CTTNBP2Q8WZ74 1663 aa26.68■■□□□ 1.86
PDXDC1-204ENST00000455313 SYNJ2O15056 1496 aa26.63■■□□□ 1.85
PDXDC1-204ENST00000455313 RANGAP1P46060 587 aaPredicted RBP26.61■■□□□ 1.85
PDXDC1-204ENST00000455313 GRIN2AQ12879 1464 aa26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms