RNA–Protein interactions for RNA: ENST00000534716.2

NDUFS3-213, Transcript of NADH:ubiquinone oxidoreductase core subunit S3, humanhuman

TSL 2 BASIC

Gene NDUFS3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDUFS3-213ENST00000534716 NISCHQ9Y2I1 1504 aa46.92■■■■■ 5.1
NDUFS3-213ENST00000534716 CCDC180Q9P1Z9 1646 aa41.96■■■■■ 4.31
NDUFS3-213ENST00000534716 ABCC9O60706 1549 aa41.63■■■■■ 4.25
NDUFS3-213ENST00000534716 RB1CC1Q8TDY2 1594 aa39.81■■■■□ 3.96
NDUFS3-213ENST00000534716 NACADO15069 1562 aa39.64■■■■□ 3.94
NDUFS3-213ENST00000534716 DCAF8L2P0C7V8 631 aa39.34■■■■□ 3.89
NDUFS3-213ENST00000534716 MYO15BQ96JP2 1530 aa39.28■■■■□ 3.88
NDUFS3-213ENST00000534716 ZCCHC6Q5VYS8 1495 aaKnown RBP38.95■■■■□ 3.83
NDUFS3-213ENST00000534716 DNAJC5BQ9UF47 199 aa38.86■■■■□ 3.81
NDUFS3-213ENST00000534716 DCAF1Q9Y4B6 1507 aa38.85■■■■□ 3.81
NDUFS3-213ENST00000534716 UNC13AQ9UPW8 1703 aa38.8■■■■□ 3.8
NDUFS3-213ENST00000534716 PABPN1Q86U42 306 aaKnown RBP eCLIP38.8■■■■□ 3.8
NDUFS3-213ENST00000534716 BICRAQ9NZM4 1560 aa38.65■■■■□ 3.78
NDUFS3-213ENST00000534716 SHROOM4Q9ULL8 1493 aa38.27■■■■□ 3.72
NDUFS3-213ENST00000534716 SCRIBQ14160 1630 aa38.16■■■■□ 3.7
NDUFS3-213ENST00000534716 EIF4G1Q04637 1599 aaKnown RBP37.66■■■■□ 3.62
NDUFS3-213ENST00000534716 CC2D2AQ9P2K1 1620 aa37.64■■■■□ 3.62
NDUFS3-213ENST00000534716 CECR2Q9BXF3 1484 aa37.52■■■■□ 3.6
NDUFS3-213ENST00000534716 NCAPD3P42695 1498 aa36.63■■■■□ 3.45
NDUFS3-213ENST00000534716 ATAD2BQ9ULI0 1458 aa36.5■■■■□ 3.43
NDUFS3-213ENST00000534716 SMARCA4P51532 1647 aa36.5■■■■□ 3.43
NDUFS3-213ENST00000534716 SMARCA2P51531 1590 aa36.42■■■■□ 3.42
NDUFS3-213ENST00000534716 BAZ1AQ9NRL2 1556 aaPredicted RBP36.39■■■■□ 3.42
NDUFS3-213ENST00000534716 HMGXB3Q12766 1538 aa36.35■■■■□ 3.41
NDUFS3-213ENST00000534716 DNAJC5Q9H3Z4 198 aa36.28■■■■□ 3.4
NDUFS3-213ENST00000534716 PEG3Q9GZU2 1588 aa36.23■■■■□ 3.39
NDUFS3-213ENST00000534716 BAZ1BQ9UIG0 1483 aaKnown RBP36.13■■■■□ 3.37
NDUFS3-213ENST00000534716 MROH2BQ7Z745 1585 aa36.11■■■■□ 3.37
NDUFS3-213ENST00000534716 ERCC6Q03468 1493 aa35.93■■■■□ 3.34
NDUFS3-213ENST00000534716 CUX2O14529 1486 aa35.87■■■■□ 3.33
NDUFS3-213ENST00000534716 NESP48681 1621 aa35.85■■■■□ 3.33
NDUFS3-213ENST00000534716 LAMC3Q9Y6N6 1575 aa35.71■■■■□ 3.31
NDUFS3-213ENST00000534716 WIZO95785 1651 aa35.65■■■■□ 3.3
NDUFS3-213ENST00000534716 PDS5BQ9NTI5 1447 aa35.51■■■■□ 3.28
NDUFS3-213ENST00000534716 RSF1Q96T23 1441 aaPredicted RBP35.5■■■■□ 3.27
NDUFS3-213ENST00000534716 CADPSQ9ULU8 1353 aa35.5■■■■□ 3.27
NDUFS3-213ENST00000534716 THOC2Q8NI27 1593 aaKnown RBP35.46■■■■□ 3.27
NDUFS3-213ENST00000534716 KIF21AQ7Z4S6 1674 aa35.35■■■■□ 3.25
NDUFS3-213ENST00000534716 TOP2AP11388 1531 aaKnown RBP35.28■■■■□ 3.24
NDUFS3-213ENST00000534716 CFTRP13569 1480 aa35.16■■■■□ 3.22
NDUFS3-213ENST00000534716 MRC2Q9UBG0 1479 aa35.16■■■■□ 3.22
NDUFS3-213ENST00000534716 WDR62O43379 1518 aa35.08■■■■□ 3.21
NDUFS3-213ENST00000534716 CEP164Q9UPV0 1460 aa35.06■■■■□ 3.2
NDUFS3-213ENST00000534716 FANCD2Q9BXW9 1451 aa35.05■■■■□ 3.2
NDUFS3-213ENST00000534716 CCDC88BA6NC98 1476 aa34.88■■■■□ 3.17
NDUFS3-213ENST00000534716 URB2Q14146 1524 aaKnown RBP34.74■■■■□ 3.15
NDUFS3-213ENST00000534716 PRDM2Q13029 1718 aa34.71■■■■□ 3.15
NDUFS3-213ENST00000534716 TRIM41Q8WV44 630 aa34.46■■■■□ 3.11
NDUFS3-213ENST00000534716 ABCC8Q09428 1581 aa34.42■■■■□ 3.1
NDUFS3-213ENST00000534716 TOPBP1Q92547 1522 aa34.41■■■■□ 3.1
NDUFS3-213ENST00000534716 IFT140Q96RY7 1462 aa34.39■■■■□ 3.1
NDUFS3-213ENST00000534716 DNMBPQ6XZF7 1577 aa34.32■■■■□ 3.08
NDUFS3-213ENST00000534716 OSCARQ8IYS5 282 aa34.26■■■■□ 3.08
NDUFS3-213ENST00000534716 ZNF608Q9ULD9 1512 aaPredicted RBP34.25■■■■□ 3.07
NDUFS3-213ENST00000534716 TARBP1Q13395 1621 aaKnown RBP34.1■■■■□ 3.05
NDUFS3-213ENST00000534716 POLA1P09884 1462 aaPredicted RBP34.09■■■■□ 3.05
NDUFS3-213ENST00000534716 EIF4G3O43432 1585 aaKnown RBP34.06■■■■□ 3.04
NDUFS3-213ENST00000534716 SUPT5HO00267 1087 aaKnown RBP34.01■■■■□ 3.03
NDUFS3-213ENST00000534716 AQRO60306 1485 aaKnown RBP eCLIP33.98■■■■□ 3.035e-6■■□□□ 14.3
NDUFS3-213ENST00000534716 SOGA1O94964 1423 aa33.95■■■■□ 3.02
NDUFS3-213ENST00000534716 RAD54L2Q9Y4B4 1467 aa33.92■■■■□ 3.02
NDUFS3-213ENST00000534716 CUX1P39880 1505 aa33.92■■■■□ 3.02
NDUFS3-213ENST00000534716 FGD5Q6ZNL6 1462 aa33.89■■■■□ 3.02
NDUFS3-213ENST00000534716 WDR97A6NE52 1622 aa33.83■■■■□ 3.01
NDUFS3-213ENST00000534716 TDRD9Q8NDG6 1382 aaKnown RBP33.81■■■■□ 3
NDUFS3-213ENST00000534716 RIMBP3CA6NJZ7 1639 aa33.71■■■□□ 2.99
NDUFS3-213ENST00000534716 RIMBP3BA6NNM3 1639 aa33.71■■■□□ 2.99
NDUFS3-213ENST00000534716 RIMBP3Q9UFD9 1639 aa33.71■■■□□ 2.99
NDUFS3-213ENST00000534716 CHD1O14646 1710 aa33.7■■■□□ 2.98
NDUFS3-213ENST00000534716 ARHGEF11O15085 1522 aa33.67■■■□□ 2.98
NDUFS3-213ENST00000534716 FBLN2P98095 1184 aa33.64■■■□□ 2.98
NDUFS3-213ENST00000534716 GRIN2BQ13224 1484 aa33.63■■■□□ 2.97
NDUFS3-213ENST00000534716 SNAPC4Q5SXM2 1469 aa33.63■■■□□ 2.97
NDUFS3-213ENST00000534716 MAGI1Q96QZ7 1491 aaPredicted RBP33.62■■■□□ 2.97
NDUFS3-213ENST00000534716 ABCA10Q8WWZ4 1543 aa33.58■■■□□ 2.97
NDUFS3-213ENST00000534716 GAPVD1Q14C86 1478 aa33.53■■■□□ 2.96
NDUFS3-213ENST00000534716 CHMP7Q8WUX9 453 aaPredicted RBP33.51■■■□□ 2.95
NDUFS3-213ENST00000534716 SYNJ2O15056 1496 aa33.5■■■□□ 2.95
NDUFS3-213ENST00000534716 WRNQ14191 1432 aaPredicted RBP eCLIP33.49■■■□□ 2.95
NDUFS3-213ENST00000534716 TOP2BQ02880 1626 aa33.46■■■□□ 2.95
NDUFS3-213ENST00000534716 ABCA5Q8WWZ7 1642 aa33.46■■■□□ 2.95
NDUFS3-213ENST00000534716 BIVM-ERCC5R4GMW8 1640 aa33.45■■■□□ 2.95
NDUFS3-213ENST00000534716 CLASP1Q7Z460 1538 aa33.43■■■□□ 2.94
NDUFS3-213ENST00000534716 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
NDUFS3-213ENST00000534716 SYNJ1O43426 1573 aa33.41■■■□□ 2.94
NDUFS3-213ENST00000534716 CYB5RLQ6IPT4 315 aa33.38■■■□□ 2.93
NDUFS3-213ENST00000534716 ARAP1Q96P48 1450 aa33.36■■■□□ 2.93
NDUFS3-213ENST00000534716 GRIN2AQ12879 1464 aa33.18■■■□□ 2.9
NDUFS3-213ENST00000534716 ADAMTS12P58397 1594 aa33.18■■■□□ 2.9
NDUFS3-213ENST00000534716 ERICH3Q5RHP9 1530 aa33.16■■■□□ 2.9
NDUFS3-213ENST00000534716 FHAD1B1AJZ9 1412 aa33.14■■■□□ 2.9
NDUFS3-213ENST00000534716 NUP160Q12769 1436 aa33.1■■■□□ 2.89
NDUFS3-213ENST00000534716 CEP170Q5SW79 1584 aa33.03■■■□□ 2.88
NDUFS3-213ENST00000534716 TRHP20396 242 aaPredicted RBP32.9■■■□□ 2.86
NDUFS3-213ENST00000534716 SHROOM2Q13796 1616 aa32.9■■■□□ 2.86
NDUFS3-213ENST00000534716 ERCC6L2Q5T890 1561 aa32.87■■■□□ 2.85
NDUFS3-213ENST00000534716 KIF27Q86VH2 1401 aa32.83■■■□□ 2.85
NDUFS3-213ENST00000534716 IGF1RP08069 1367 aa32.81■■■□□ 2.84
NDUFS3-213ENST00000534716 JPH4Q96JJ6 628 aa32.74■■■□□ 2.83
NDUFS3-213ENST00000534716 PRG4Q92954 1404 aaPredicted RBP32.71■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms