RNA–Protein interactions for RNA: ENST00000357207.8

TRAPPC11-202, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,435 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-202ENST00000357207 DCAF8L2P0C7V8 631 aa26.41■■□□□ 1.82
TRAPPC11-202ENST00000357207 NISCHQ9Y2I1 1504 aa26.16■■□□□ 1.78
TRAPPC11-202ENST00000357207 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
TRAPPC11-202ENST00000357207 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
TRAPPC11-202ENST00000357207 EHMT2Q96KQ7 1210 aa24.71■■□□□ 1.55
TRAPPC11-202ENST00000357207 PCGF6Q9BYE7 350 aa24.68■■□□□ 1.54
TRAPPC11-202ENST00000357207 PELP1Q8IZL8 1130 aaKnown RBP24.46■■□□□ 1.51
TRAPPC11-202ENST00000357207 FAM9AQ8IZU1 332 aaPredicted RBP24.3■■□□□ 1.48
TRAPPC11-202ENST00000357207 ZEB1P37275 1124 aaPredicted RBP24.19■■□□□ 1.46
TRAPPC11-202ENST00000357207 APLP2Q06481 763 aa24.14■■□□□ 1.45
TRAPPC11-202ENST00000357207 CENPBP07199 599 aaPredicted RBP24.06■■□□□ 1.44
TRAPPC11-202ENST00000357207 TTBK1Q5TCY1 1321 aaPredicted RBP23.97■■□□□ 1.43
TRAPPC11-202ENST00000357207 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
TRAPPC11-202ENST00000357207 CCER1Q8TC90 406 aaPredicted RBP23.9■■□□□ 1.42
TRAPPC11-202ENST00000357207 HRCP23327 699 aa23.84■■□□□ 1.41
TRAPPC11-202ENST00000357207 TRIM26Q12899 539 aaPredicted RBP23.65■■□□□ 1.38
TRAPPC11-202ENST00000357207 MYT1Q01538 1121 aa23.57■■□□□ 1.36
TRAPPC11-202ENST00000357207 CHIC1Q5VXU3 224 aa23.49■■□□□ 1.35
TRAPPC11-202ENST00000357207 RANGAP1P46060 587 aaPredicted RBP23.46■■□□□ 1.35
TRAPPC11-202ENST00000357207 UBTFP17480 764 aaKnown RBP23.45■■□□□ 1.34
TRAPPC11-202ENST00000357207 YTHDC1Q96MU7 727 aaKnown RBP23.44■■□□□ 1.34
TRAPPC11-202ENST00000357207 PPARGC1BQ86YN6 1023 aaKnown RBP23.4■■□□□ 1.34
TRAPPC11-202ENST00000357207 ERICH6Q7L0X2 663 aa23.39■■□□□ 1.34
TRAPPC11-202ENST00000357207 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
TRAPPC11-202ENST00000357207 NEFLP07196 543 aa23.22■■□□□ 1.31
TRAPPC11-202ENST00000357207 ATP1B4Q9UN42 357 aaPredicted RBP23.09■■□□□ 1.29
TRAPPC11-202ENST00000357207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.86■■□□□ 1.25
TRAPPC11-202ENST00000357207 DIEXFQ68CQ4 756 aaKnown RBP22.85■■□□□ 1.25
TRAPPC11-202ENST00000357207 HNRNPUL2Q1KMD3 747 aaKnown RBP22.83■■□□□ 1.25
TRAPPC11-202ENST00000357207 ITGAEP38570 1179 aa22.71■■□□□ 1.23
TRAPPC11-202ENST00000357207 GTF3C3Q9Y5Q9 886 aa22.59■■□□□ 1.21
TRAPPC11-202ENST00000357207 ACIN1Q9UKV3 1341 aaKnown RBP22.38■■□□□ 1.17
TRAPPC11-202ENST00000357207 POLR3GLQ9BT43 218 aa22.33■■□□□ 1.17
TRAPPC11-202ENST00000357207 ZNF316A6NFI3 1004 aaPredicted RBP22.32■■□□□ 1.16
TRAPPC11-202ENST00000357207 DAXXQ9UER7 740 aaPredicted RBP22.3■■□□□ 1.16
TRAPPC11-202ENST00000357207 CNGB1Q14028 1251 aaPredicted RBP22.21■■□□□ 1.15
TRAPPC11-202ENST00000357207 BCANQ96GW7 911 aa22.17■■□□□ 1.14
TRAPPC11-202ENST00000357207 DCAF1Q9Y4B6 1507 aa22.13■■□□□ 1.13
TRAPPC11-202ENST00000357207 RTL5Q5HYW3 569 aaPredicted RBP22.11■■□□□ 1.13
TRAPPC11-202ENST00000357207 FAM50AQ14320 339 aaKnown RBP22.11■■□□□ 1.13
TRAPPC11-202ENST00000357207 NEUROD1Q13562 356 aa22.08■■□□□ 1.12
TRAPPC11-202ENST00000357207 ANP32CO43423 234 aa22.02■■□□□ 1.12
TRAPPC11-202ENST00000357207 CSRNP3Q8WYN3 585 aa21.97■■□□□ 1.11
TRAPPC11-202ENST00000357207 CDK11AQ9UQ88 783 aaPredicted RBP21.95■■□□□ 1.1
TRAPPC11-202ENST00000357207 TRIM52Q96A61 297 aa21.89■■□□□ 1.09
TRAPPC11-202ENST00000357207 SCAF1Q9H7N4 1312 aaKnown RBP21.88■■□□□ 1.09
TRAPPC11-202ENST00000357207 CLSPNQ9HAW4 1339 aa21.82■■□□□ 1.08
TRAPPC11-202ENST00000357207 ABCC9O60706 1549 aa21.8■■□□□ 1.08
TRAPPC11-202ENST00000357207 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRAPPC11-202ENST00000357207 MYT1LQ9UL68 1186 aa21.79■■□□□ 1.08
TRAPPC11-202ENST00000357207 ZCCHC6Q5VYS8 1495 aaKnown RBP21.75■■□□□ 1.07
TRAPPC11-202ENST00000357207 MYO15BQ96JP2 1530 aa21.7■■□□□ 1.06
TRAPPC11-202ENST00000357207 FKBP8Q14318 412 aa21.68■■□□□ 1.06
TRAPPC11-202ENST00000357207 ZNF326Q5BKZ1 582 aaKnown RBP21.63■■□□□ 1.05
TRAPPC11-202ENST00000357207 SLC4A1APQ9BWU0 796 aaKnown RBP21.6■■□□□ 1.05
TRAPPC11-202ENST00000357207 MIER1Q8N108 512 aa21.58■■□□□ 1.05
TRAPPC11-202ENST00000357207 DDX10Q13206 875 aaKnown RBP21.55■■□□□ 1.04
TRAPPC11-202ENST00000357207 ANP32AP39687 249 aaKnown RBP21.54■■□□□ 1.04
TRAPPC11-202ENST00000357207 P3H3Q8IVL6 736 aa21.53■■□□□ 1.04
TRAPPC11-202ENST00000357207 HNRNPUQ00839 825 aaKnown RBP eCLIP21.47■■□□□ 1.03
TRAPPC11-202ENST00000357207 TONSLQ96HA7 1378 aa21.43■■□□□ 1.02
TRAPPC11-202ENST00000357207 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
TRAPPC11-202ENST00000357207 NPM2Q86SE8 214 aaKnown RBP21.35■■□□□ 1.01
TRAPPC11-202ENST00000357207 CCDC180Q9P1Z9 1646 aa21.33■■□□□ 1.01
TRAPPC11-202ENST00000357207 FAM9BQ8IZU0 186 aa21.31■■□□□ 1
TRAPPC11-202ENST00000357207 CANXP27824 592 aaKnown RBP21.26■□□□□ 0.99
TRAPPC11-202ENST00000357207 ARID3CA6NKF2 412 aa21.26■□□□□ 0.99
TRAPPC11-202ENST00000357207 CLIP1P30622 1438 aa21.23■□□□□ 0.99
TRAPPC11-202ENST00000357207 CCDC136Q96JN2 1154 aa21.2■□□□□ 0.98
TRAPPC11-202ENST00000357207 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
TRAPPC11-202ENST00000357207 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
TRAPPC11-202ENST00000357207 ZBTB47Q9UFB7 747 aaPredicted RBP21.18■□□□□ 0.98
TRAPPC11-202ENST00000357207 HIRIP3Q9BW71 556 aaPredicted RBP21.15■□□□□ 0.98
TRAPPC11-202ENST00000357207 ZNF777Q9ULD5 760 aaPredicted RBP21.15■□□□□ 0.98
TRAPPC11-202ENST00000357207 MRS2Q9HD23 443 aa21.14■□□□□ 0.98
TRAPPC11-202ENST00000357207 NBR1Q14596 966 aa21.13■□□□□ 0.97
TRAPPC11-202ENST00000357207 IRX6P78412 446 aaPredicted RBP21.13■□□□□ 0.97
TRAPPC11-202ENST00000357207 FBLN2P98095 1184 aa21.13■□□□□ 0.97
TRAPPC11-202ENST00000357207 EIF5BO60841 1220 aaKnown RBP21.12■□□□□ 0.97
TRAPPC11-202ENST00000357207 EEA1Q15075 1411 aa21.12■□□□□ 0.97
TRAPPC11-202ENST00000357207 TMC1Q8TDI8 760 aa21.1■□□□□ 0.97
TRAPPC11-202ENST00000357207 ANP32EQ9BTT0 268 aa21.1■□□□□ 0.97
TRAPPC11-202ENST00000357207 SALL2Q9Y467 1007 aaPredicted RBP21.08■□□□□ 0.96
TRAPPC11-202ENST00000357207 CHIC2Q9UKJ5 165 aa21.06■□□□□ 0.96
TRAPPC11-202ENST00000357207 GOLGA3Q08378 1498 aa21.05■□□□□ 0.96
TRAPPC11-202ENST00000357207 TNIKQ9UKE5 1360 aa21.04■□□□□ 0.96
TRAPPC11-202ENST00000357207 BCL11AQ9H165 835 aa21.02■□□□□ 0.95
TRAPPC11-202ENST00000357207 EIF4G2P78344 907 aaKnown RBP eCLIP20.99■□□□□ 0.95
TRAPPC11-202ENST00000357207 NEFMP07197 916 aa20.98■□□□□ 0.95
TRAPPC11-202ENST00000357207 SUPT16HQ9Y5B9 1047 aaKnown RBP20.96■□□□□ 0.95
TRAPPC11-202ENST00000357207 UPF2Q9HAU5 1272 aaKnown RBP20.96■□□□□ 0.95
TRAPPC11-202ENST00000357207 MTUS2Q5JR59 1369 aa20.95■□□□□ 0.95
TRAPPC11-202ENST00000357207 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.89■□□□□ 0.94
TRAPPC11-202ENST00000357207 HSP90AA1P07900 732 aaKnown RBP20.86■□□□□ 0.93
TRAPPC11-202ENST00000357207 ANP32BQ92688 251 aaKnown RBP20.86■□□□□ 0.93
TRAPPC11-202ENST00000357207 WRNQ14191 1432 aaPredicted RBP eCLIP20.86■□□□□ 0.93
TRAPPC11-202ENST00000357207 RRP7BPQ9NSQ0 103 aa20.83■□□□□ 0.92
TRAPPC11-202ENST00000357207 CEP164Q9UPV0 1460 aa20.82■□□□□ 0.92
TRAPPC11-202ENST00000357207 KDM2AQ9Y2K7 1162 aa20.82■□□□□ 0.92
TRAPPC11-202ENST00000357207 WDR43Q15061 677 aaKnown RBP eCLIP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms