RNA–Protein interactions for RNA: ENST00000476842.1

SMIM4-202, Transcript of small integral membrane protein 4, humanhuman

TSL 4 BASIC

Gene SMIM4, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-202ENST00000476842 NISCHQ9Y2I1 1504 aa42.86■■■■■ 4.45
SMIM4-202ENST00000476842 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
SMIM4-202ENST00000476842 ABCC9O60706 1549 aa37.05■■■■□ 3.52
SMIM4-202ENST00000476842 DCAF8L2P0C7V8 631 aa35.84■■■■□ 3.33
SMIM4-202ENST00000476842 NACADO15069 1562 aa35.7■■■■□ 3.31
SMIM4-202ENST00000476842 ZCCHC6Q5VYS8 1495 aaKnown RBP35.7■■■■□ 3.31
SMIM4-202ENST00000476842 RB1CC1Q8TDY2 1594 aa35.68■■■■□ 3.3
SMIM4-202ENST00000476842 MYO15BQ96JP2 1530 aa35.57■■■■□ 3.29
SMIM4-202ENST00000476842 DCAF1Q9Y4B6 1507 aa35.47■■■■□ 3.27
SMIM4-202ENST00000476842 PABPN1Q86U42 306 aaKnown RBP eCLIP34.73■■■■□ 3.15
SMIM4-202ENST00000476842 UNC13AQ9UPW8 1703 aa34.72■■■■□ 3.15
SMIM4-202ENST00000476842 SCRIBQ14160 1630 aa34.62■■■■□ 3.13
SMIM4-202ENST00000476842 BICRAQ9NZM4 1560 aa34.59■■■■□ 3.13
SMIM4-202ENST00000476842 SHROOM4Q9ULL8 1493 aa34.27■■■■□ 3.08
SMIM4-202ENST00000476842 DNAJC5BQ9UF47 199 aa33.98■■■■□ 3.03
SMIM4-202ENST00000476842 EIF4G1Q04637 1599 aaKnown RBP33.67■■■□□ 2.98
SMIM4-202ENST00000476842 CC2D2AQ9P2K1 1620 aa33.47■■■□□ 2.95
SMIM4-202ENST00000476842 CECR2Q9BXF3 1484 aa33.37■■■□□ 2.93
SMIM4-202ENST00000476842 BAZ1AQ9NRL2 1556 aaPredicted RBP33.17■■■□□ 2.9
SMIM4-202ENST00000476842 SMARCA4P51532 1647 aa33.15■■■□□ 2.9
SMIM4-202ENST00000476842 ATAD2BQ9ULI0 1458 aa33.02■■■□□ 2.88
SMIM4-202ENST00000476842 MROH2BQ7Z745 1585 aa33.01■■■□□ 2.88
SMIM4-202ENST00000476842 NCAPD3P42695 1498 aa33.01■■■□□ 2.88
SMIM4-202ENST00000476842 SMARCA2P51531 1590 aa32.94■■■□□ 2.86
SMIM4-202ENST00000476842 PEG3Q9GZU2 1588 aa32.87■■■□□ 2.85
SMIM4-202ENST00000476842 HMGXB3Q12766 1538 aa32.77■■■□□ 2.84
SMIM4-202ENST00000476842 RSF1Q96T23 1441 aaPredicted RBP32.76■■■□□ 2.83
SMIM4-202ENST00000476842 BAZ1BQ9UIG0 1483 aaKnown RBP32.72■■■□□ 2.83
SMIM4-202ENST00000476842 WIZO95785 1651 aa32.6■■■□□ 2.81
SMIM4-202ENST00000476842 TOP2AP11388 1531 aaKnown RBP32.3■■■□□ 2.76
SMIM4-202ENST00000476842 NESP48681 1621 aa32.1■■■□□ 2.73
SMIM4-202ENST00000476842 SUPT5HO00267 1087 aaKnown RBP32.07■■■□□ 2.72
SMIM4-202ENST00000476842 CADPSQ9ULU8 1353 aa32.07■■■□□ 2.72
SMIM4-202ENST00000476842 LAMC3Q9Y6N6 1575 aa32.02■■■□□ 2.72
SMIM4-202ENST00000476842 CCDC88BA6NC98 1476 aa31.99■■■□□ 2.71
SMIM4-202ENST00000476842 ERCC6Q03468 1493 aa31.91■■■□□ 2.7
SMIM4-202ENST00000476842 PDS5BQ9NTI5 1447 aa31.89■■■□□ 2.7
SMIM4-202ENST00000476842 CFTRP13569 1480 aa31.88■■■□□ 2.69
SMIM4-202ENST00000476842 FANCD2Q9BXW9 1451 aa31.64■■■□□ 2.66
SMIM4-202ENST00000476842 KIF21AQ7Z4S6 1674 aa31.6■■■□□ 2.65
SMIM4-202ENST00000476842 CEP164Q9UPV0 1460 aa31.57■■■□□ 2.64
SMIM4-202ENST00000476842 CUX2O14529 1486 aa31.53■■■□□ 2.64
SMIM4-202ENST00000476842 THOC2Q8NI27 1593 aaKnown RBP31.51■■■□□ 2.63
SMIM4-202ENST00000476842 MRC2Q9UBG0 1479 aa31.5■■■□□ 2.63
SMIM4-202ENST00000476842 PRDM2Q13029 1718 aa31.41■■■□□ 2.62
SMIM4-202ENST00000476842 WDR62O43379 1518 aa31.35■■■□□ 2.61
SMIM4-202ENST00000476842 URB2Q14146 1524 aaKnown RBP31.3■■■□□ 2.6
SMIM4-202ENST00000476842 ABCC8Q09428 1581 aa31.19■■■□□ 2.58
SMIM4-202ENST00000476842 TOPBP1Q92547 1522 aa31.14■■■□□ 2.57
SMIM4-202ENST00000476842 DNMBPQ6XZF7 1577 aa31.09■■■□□ 2.57
SMIM4-202ENST00000476842 CUX1P39880 1505 aa30.95■■■□□ 2.55
SMIM4-202ENST00000476842 IFT140Q96RY7 1462 aa30.93■■■□□ 2.54
SMIM4-202ENST00000476842 POLA1P09884 1462 aaPredicted RBP30.89■■■□□ 2.54
SMIM4-202ENST00000476842 WRNQ14191 1432 aaPredicted RBP eCLIP30.85■■■□□ 2.53
SMIM4-202ENST00000476842 SOGA1O94964 1423 aa30.83■■■□□ 2.53
SMIM4-202ENST00000476842 FGD5Q6ZNL6 1462 aa30.82■■■□□ 2.53
SMIM4-202ENST00000476842 RAD54L2Q9Y4B4 1467 aa30.77■■■□□ 2.52
SMIM4-202ENST00000476842 ZNF608Q9ULD9 1512 aaPredicted RBP30.76■■■□□ 2.51
SMIM4-202ENST00000476842 TARBP1Q13395 1621 aaKnown RBP30.75■■■□□ 2.51
SMIM4-202ENST00000476842 TOP2BQ02880 1626 aa30.7■■■□□ 2.51
SMIM4-202ENST00000476842 SYNJ1O43426 1573 aa30.69■■■□□ 2.5
SMIM4-202ENST00000476842 BIVM-ERCC5R4GMW8 1640 aa30.66■■■□□ 2.5
SMIM4-202ENST00000476842 AQRO60306 1485 aaKnown RBP eCLIP30.64■■■□□ 2.5
SMIM4-202ENST00000476842 TDRD9Q8NDG6 1382 aaKnown RBP30.64■■■□□ 2.5
SMIM4-202ENST00000476842 ABCA10Q8WWZ4 1543 aa30.56■■■□□ 2.48
SMIM4-202ENST00000476842 EIF4G3O43432 1585 aaKnown RBP30.55■■■□□ 2.48
SMIM4-202ENST00000476842 WDR97A6NE52 1622 aa30.51■■■□□ 2.48
SMIM4-202ENST00000476842 DNAJC5Q9H3Z4 198 aa30.5■■■□□ 2.47
SMIM4-202ENST00000476842 GAPVD1Q14C86 1478 aa30.44■■■□□ 2.46
SMIM4-202ENST00000476842 GRIN2BQ13224 1484 aa30.41■■■□□ 2.46
SMIM4-202ENST00000476842 OSCARQ8IYS5 282 aa30.37■■■□□ 2.45
SMIM4-202ENST00000476842 ABCA5Q8WWZ7 1642 aa30.34■■■□□ 2.45
SMIM4-202ENST00000476842 SNAPC4Q5SXM2 1469 aa30.31■■■□□ 2.44
SMIM4-202ENST00000476842 TRIM41Q8WV44 630 aa30.31■■■□□ 2.44
SMIM4-202ENST00000476842 MAGI1Q96QZ7 1491 aaPredicted RBP30.29■■■□□ 2.44
SMIM4-202ENST00000476842 FBLN2P98095 1184 aa30.28■■■□□ 2.44
SMIM4-202ENST00000476842 CHMP7Q8WUX9 453 aaPredicted RBP30.24■■■□□ 2.43
SMIM4-202ENST00000476842 KIF27Q86VH2 1401 aa30.22■■■□□ 2.43
SMIM4-202ENST00000476842 PBRM1Q86U86 1689 aa30.2■■■□□ 2.42
SMIM4-202ENST00000476842 SYNJ2O15056 1496 aa30.19■■■□□ 2.42
SMIM4-202ENST00000476842 ERICH3Q5RHP9 1530 aa30.18■■■□□ 2.42
SMIM4-202ENST00000476842 IGF1RP08069 1367 aa30.13■■■□□ 2.41
SMIM4-202ENST00000476842 FHAD1B1AJZ9 1412 aa30.11■■■□□ 2.41
SMIM4-202ENST00000476842 CHD1O14646 1710 aa30.08■■■□□ 2.41
SMIM4-202ENST00000476842 CHIC1Q5VXU3 224 aa30.06■■■□□ 2.4
SMIM4-202ENST00000476842 ADAMTS12P58397 1594 aa30.03■■■□□ 2.4
SMIM4-202ENST00000476842 GRIN2AQ12879 1464 aa29.99■■■□□ 2.39
SMIM4-202ENST00000476842 RUSC2Q8N2Y8 1516 aa29.96■■■□□ 2.39
SMIM4-202ENST00000476842 CARMIL1Q5VZK9 1371 aa29.93■■■□□ 2.38
SMIM4-202ENST00000476842 NUP160Q12769 1436 aa29.88■■■□□ 2.37
SMIM4-202ENST00000476842 CUL7Q14999 1698 aa29.87■■■□□ 2.37
SMIM4-202ENST00000476842 CLASP1Q7Z460 1538 aa29.86■■■□□ 2.37
SMIM4-202ENST00000476842 CEP170Q5SW79 1584 aa29.79■■■□□ 2.36
SMIM4-202ENST00000476842 CSRNP3Q8WYN3 585 aa29.76■■■□□ 2.35
SMIM4-202ENST00000476842 ARHGEF11O15085 1522 aa29.74■■■□□ 2.35
SMIM4-202ENST00000476842 EEA1Q15075 1411 aa29.73■■■□□ 2.35
SMIM4-202ENST00000476842 RAPGEF2Q9Y4G8 1499 aa29.73■■■□□ 2.35
SMIM4-202ENST00000476842 RIMBP3CA6NJZ7 1639 aa29.69■■■□□ 2.34
SMIM4-202ENST00000476842 RIMBP3BA6NNM3 1639 aa29.69■■■□□ 2.34
SMIM4-202ENST00000476842 RIMBP3Q9UFD9 1639 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms