Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.07□□□□□ -0.16
USF1P22415 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
USF1P22415 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.07□□□□□ -0.16
USF1P22415 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.07□□□□□ -0.16
USF1P22415 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.07□□□□□ -0.16
USF1P22415 AC051619.7-201ENST00000568314 623 ntBASIC14.07□□□□□ -0.16
USF1P22415 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.07□□□□□ -0.16
USF1P22415 AC138649.4-201ENST00000612222 287 ntBASIC14.07□□□□□ -0.16
USF1P22415 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
USF1P22415 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USF1P22415 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USF1P22415 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
USF1P22415 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 HCG4-201ENST00000418983 998 ntBASIC14.06□□□□□ -0.16
USF1P22415 SPDYE7P-202ENST00000420373 878 ntBASIC14.06□□□□□ -0.16
USF1P22415 AC107890.1-201ENST00000422478 521 ntBASIC14.06□□□□□ -0.16
USF1P22415 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 AC125807.1-201ENST00000483097 614 ntBASIC14.06□□□□□ -0.16
USF1P22415 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 AC190387.1-201ENST00000551683 408 ntBASIC14.06□□□□□ -0.16
USF1P22415 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.06□□□□□ -0.16
USF1P22415 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.06□□□□□ -0.16
USF1P22415 AL390955.2-201ENST00000603032 514 ntBASIC14.06□□□□□ -0.16
USF1P22415 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.06□□□□□ -0.16
USF1P22415 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
USF1P22415 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
USF1P22415 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USF1P22415 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
USF1P22415 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.05□□□□□ -0.16
USF1P22415 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.05□□□□□ -0.16
USF1P22415 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.05□□□□□ -0.16
USF1P22415 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
USF1P22415 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
USF1P22415 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
USF1P22415 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms