RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
CCDC28B-202ENST00000421922 CCDC180Q9P1Z9 1646 aa34.76■■■■□ 3.15
CCDC28B-202ENST00000421922 ABCC9O60706 1549 aa33.33■■■□□ 2.93
CCDC28B-202ENST00000421922 ZCCHC6Q5VYS8 1495 aaKnown RBP33.12■■■□□ 2.89
CCDC28B-202ENST00000421922 DCAF8L2P0C7V8 631 aa32.75■■■□□ 2.83
CCDC28B-202ENST00000421922 DCAF1Q9Y4B6 1507 aa32.7■■■□□ 2.82
CCDC28B-202ENST00000421922 MYO15BQ96JP2 1530 aa32.45■■■□□ 2.79
CCDC28B-202ENST00000421922 NACADO15069 1562 aa32.42■■■□□ 2.78
CCDC28B-202ENST00000421922 RB1CC1Q8TDY2 1594 aa32.26■■■□□ 2.75
CCDC28B-202ENST00000421922 SHROOM4Q9ULL8 1493 aa31.92■■■□□ 2.7
CCDC28B-202ENST00000421922 SCRIBQ14160 1630 aa31.84■■■□□ 2.69
CCDC28B-202ENST00000421922 DNAJC5BQ9UF47 199 aa31.79■■■□□ 2.68
CCDC28B-202ENST00000421922 UNC13AQ9UPW8 1703 aa31.55■■■□□ 2.64
CCDC28B-202ENST00000421922 BICRAQ9NZM4 1560 aa31.15■■■□□ 2.58
CCDC28B-202ENST00000421922 PABPN1Q86U42 306 aaKnown RBP eCLIP31.05■■■□□ 2.56
CCDC28B-202ENST00000421922 CECR2Q9BXF3 1484 aa30.64■■■□□ 2.49
CCDC28B-202ENST00000421922 BAZ1AQ9NRL2 1556 aaPredicted RBP30.6■■■□□ 2.49
CCDC28B-202ENST00000421922 SUPT5HO00267 1087 aaKnown RBP30.54■■■□□ 2.48
CCDC28B-202ENST00000421922 SMARCA4P51532 1647 aa30.5■■■□□ 2.47
CCDC28B-202ENST00000421922 MROH2BQ7Z745 1585 aa30.46■■■□□ 2.47
CCDC28B-202ENST00000421922 RSF1Q96T23 1441 aaPredicted RBP30.43■■■□□ 2.46
CCDC28B-202ENST00000421922 EIF4G1Q04637 1599 aaKnown RBP30.31■■■□□ 2.44
CCDC28B-202ENST00000421922 WIZO95785 1651 aa30.24■■■□□ 2.43
CCDC28B-202ENST00000421922 PEG3Q9GZU2 1588 aa30.11■■■□□ 2.41
CCDC28B-202ENST00000421922 SMARCA2P51531 1590 aa30.1■■■□□ 2.41
CCDC28B-202ENST00000421922 CC2D2AQ9P2K1 1620 aa30.08■■■□□ 2.41
CCDC28B-202ENST00000421922 ATAD2BQ9ULI0 1458 aa30.02■■■□□ 2.4
CCDC28B-202ENST00000421922 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
CCDC28B-202ENST00000421922 BAZ1BQ9UIG0 1483 aaKnown RBP29.92■■■□□ 2.38
CCDC28B-202ENST00000421922 HMGXB3Q12766 1538 aa29.84■■■□□ 2.37
CCDC28B-202ENST00000421922 NCAPD3P42695 1498 aa29.83■■■□□ 2.37
CCDC28B-202ENST00000421922 CCDC88BA6NC98 1476 aa29.57■■■□□ 2.32
CCDC28B-202ENST00000421922 DNAJC5Q9H3Z4 198 aa29.52■■■□□ 2.32
CCDC28B-202ENST00000421922 PRDM2Q13029 1718 aa29.08■■■□□ 2.25
CCDC28B-202ENST00000421922 CFTRP13569 1480 aa29.07■■■□□ 2.24
CCDC28B-202ENST00000421922 CADPSQ9ULU8 1353 aa29.05■■■□□ 2.24
CCDC28B-202ENST00000421922 LAMC3Q9Y6N6 1575 aa28.98■■■□□ 2.23
CCDC28B-202ENST00000421922 CHIC1Q5VXU3 224 aa28.96■■■□□ 2.23
CCDC28B-202ENST00000421922 CUX2O14529 1486 aa28.91■■■□□ 2.22
CCDC28B-202ENST00000421922 NESP48681 1621 aa28.87■■■□□ 2.21
CCDC28B-202ENST00000421922 ABCC8Q09428 1581 aa28.84■■■□□ 2.21
CCDC28B-202ENST00000421922 TRIM41Q8WV44 630 aa28.77■■■□□ 2.2
CCDC28B-202ENST00000421922 ERCC6Q03468 1493 aa28.76■■■□□ 2.2
CCDC28B-202ENST00000421922 FANCD2Q9BXW9 1451 aa28.76■■■□□ 2.2
CCDC28B-202ENST00000421922 PDS5BQ9NTI5 1447 aa28.75■■■□□ 2.19
CCDC28B-202ENST00000421922 WRNQ14191 1432 aaPredicted RBP eCLIP28.74■■■□□ 2.19
CCDC28B-202ENST00000421922 CEP164Q9UPV0 1460 aa28.67■■■□□ 2.18
CCDC28B-202ENST00000421922 KIF21AQ7Z4S6 1674 aa28.65■■■□□ 2.18
CCDC28B-202ENST00000421922 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
CCDC28B-202ENST00000421922 TOP2BQ02880 1626 aa28.57■■■□□ 2.16
CCDC28B-202ENST00000421922 BIVM-ERCC5R4GMW8 1640 aa28.57■■■□□ 2.16
CCDC28B-202ENST00000421922 CUX1P39880 1505 aa28.53■■■□□ 2.16
CCDC28B-202ENST00000421922 DNMBPQ6XZF7 1577 aa28.48■■■□□ 2.15
CCDC28B-202ENST00000421922 TOPBP1Q92547 1522 aa28.4■■■□□ 2.14
CCDC28B-202ENST00000421922 MRC2Q9UBG0 1479 aa28.4■■■□□ 2.14
CCDC28B-202ENST00000421922 URB2Q14146 1524 aaKnown RBP28.37■■■□□ 2.13
CCDC28B-202ENST00000421922 THOC2Q8NI27 1593 aaKnown RBP28.32■■■□□ 2.12
CCDC28B-202ENST00000421922 FGD5Q6ZNL6 1462 aa28.31■■■□□ 2.12
CCDC28B-202ENST00000421922 WDR62O43379 1518 aa28.25■■■□□ 2.11
CCDC28B-202ENST00000421922 POLA1P09884 1462 aaPredicted RBP28.22■■■□□ 2.11
CCDC28B-202ENST00000421922 EEA1Q15075 1411 aa28.2■■■□□ 2.1
CCDC28B-202ENST00000421922 FAM9AQ8IZU1 332 aaPredicted RBP28.19■■■□□ 2.1
CCDC28B-202ENST00000421922 SOGA1O94964 1423 aa28.17■■■□□ 2.1
CCDC28B-202ENST00000421922 KIF27Q86VH2 1401 aa28.08■■■□□ 2.09
CCDC28B-202ENST00000421922 RAD54L2Q9Y4B4 1467 aa28.08■■■□□ 2.09
CCDC28B-202ENST00000421922 RUSC2Q8N2Y8 1516 aa28.05■■■□□ 2.08
CCDC28B-202ENST00000421922 ABCA10Q8WWZ4 1543 aa28.05■■■□□ 2.08
CCDC28B-202ENST00000421922 WDR97A6NE52 1622 aa28.05■■■□□ 2.08
CCDC28B-202ENST00000421922 TARBP1Q13395 1621 aaKnown RBP28■■■□□ 2.07
CCDC28B-202ENST00000421922 IFT140Q96RY7 1462 aa27.99■■■□□ 2.07
CCDC28B-202ENST00000421922 CSRNP3Q8WYN3 585 aa27.97■■■□□ 2.07
CCDC28B-202ENST00000421922 ABCA5Q8WWZ7 1642 aa27.88■■■□□ 2.05
CCDC28B-202ENST00000421922 TDRD9Q8NDG6 1382 aaKnown RBP27.84■■■□□ 2.05
CCDC28B-202ENST00000421922 KIF21BO75037 1637 aa27.84■■■□□ 2.05
CCDC28B-202ENST00000421922 GAPVD1Q14C86 1478 aa27.84■■■□□ 2.05
CCDC28B-202ENST00000421922 LOC105371045A0A1W2PR82 267 aa27.8■■■□□ 2.04
CCDC28B-202ENST00000421922 EHMT2Q96KQ7 1210 aa27.8■■■□□ 2.04
CCDC28B-202ENST00000421922 PBRM1Q86U86 1689 aa27.79■■■□□ 2.04
CCDC28B-202ENST00000421922 GOLGA3Q08378 1498 aa27.77■■■□□ 2.04
CCDC28B-202ENST00000421922 EIF4G3O43432 1585 aaKnown RBP27.76■■■□□ 2.03
CCDC28B-202ENST00000421922 ERICH3Q5RHP9 1530 aa27.76■■■□□ 2.03
CCDC28B-202ENST00000421922 CUL7Q14999 1698 aa27.76■■■□□ 2.03
CCDC28B-202ENST00000421922 ZNF608Q9ULD9 1512 aaPredicted RBP27.75■■■□□ 2.03
CCDC28B-202ENST00000421922 IGF1RP08069 1367 aa27.74■■■□□ 2.03
CCDC28B-202ENST00000421922 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.033e-7■■■□□ 17
CCDC28B-202ENST00000421922 PRXQ9BXM0 1461 aa27.71■■■□□ 2.03
CCDC28B-202ENST00000421922 GRIN2BQ13224 1484 aa27.7■■■□□ 2.02
CCDC28B-202ENST00000421922 CARMIL1Q5VZK9 1371 aa27.67■■■□□ 2.02
CCDC28B-202ENST00000421922 RAPGEF2Q9Y4G8 1499 aa27.65■■■□□ 2.02
CCDC28B-202ENST00000421922 UBTFP17480 764 aaKnown RBP27.64■■■□□ 2.02
CCDC28B-202ENST00000421922 ADAMTS12P58397 1594 aa27.57■■■□□ 2
CCDC28B-202ENST00000421922 TNIKQ9UKE5 1360 aa27.54■■■□□ 2
CCDC28B-202ENST00000421922 SNAPC4Q5SXM2 1469 aa27.54■■■□□ 2
CCDC28B-202ENST00000421922 FHAD1B1AJZ9 1412 aa27.53■■■□□ 2
CCDC28B-202ENST00000421922 MAGI1Q96QZ7 1491 aaPredicted RBP27.52■■■□□ 2
CCDC28B-202ENST00000421922 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
CCDC28B-202ENST00000421922 CTTNBP2Q8WZ74 1663 aa27.41■■□□□ 1.98
CCDC28B-202ENST00000421922 SYNJ2O15056 1496 aa27.39■■□□□ 1.98
CCDC28B-202ENST00000421922 CEP162Q5TB80 1403 aa27.39■■□□□ 1.97
CCDC28B-202ENST00000421922 CHMP7Q8WUX9 453 aaPredicted RBP27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms