Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CHMP1AQ9HD42 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CHMP1AQ9HD42 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC14.45□□□□□ -0.1
CHMP1AQ9HD42 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 BX276092.5-203ENST00000456199 560 ntBASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms